Lolium rigidum (rigid ryegrass): 124691319
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Entry
124691319 CDS
T09103
Name
(RefSeq) nuclear pore complex protein NUP160
KO
K14303
nuclear pore complex protein Nup160
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124691319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124691319
03036 Chromosome and associated proteins [BR:
lrd03036
]
124691319
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124691319
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124691319
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
HEAT_Nup120
TPR_Nup160_C
NUP160_helical
Beta-prop_WDR35_2nd
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
124691319
NCBI-ProteinID:
XP_047080549
LinkDB
All DBs
Position
2:14212299..14227935
Genome browser
AA seq
1513 aa
AA seq
DB search
MAAPAAGSRKIAGTEVPITGSDKVRWIDLTVPSSPSAAPASPADPFVSVPPRAASGCHVV
SSGGASQRYLAWRIHEEHQNVLEVIELCASKEFPSSGLRLVFQEALCPFAFMCESEGARR
GESVYLLYVLTISGVALLCNLRSPFSYVSGSILSQNDVLEFSLQTHTQSANVTAVQAKPG
CLVIGRQDGSICCYSLGKLAPSSPGFSNELRDDAGIGRLWTLVSRTKALGPVQDIDTATV
NERELLFALHLDGSLRVWDISSHTKLLNYNVHSNDFEGQPSRVWVGEADDDQELISLAVL
HQGTMVPACDRVVVYGFSFGVGERFLLSPEPLVSAIPLLEGKLIDLKISTEKLWILKEVG
PMLYEIVQYDSDGEEICSYVLQEDAISEQMFQSSESALDDLVWTADSIFSSMKEHSFSFI
SSMFLRRLLQPGVNHCSALRETLLEYKRFLSDSEFQSLTTSGLRKEILSIIELEGSSQSA
SSTAYHWKKFSARYLHKWCENNRPYGLFLDTNREVFGLVRKGSFSLFRCLEGVEQLIYGS
SDELGNLEGLEMNLFDDASDTETLIEVLRCMGHINHLLGRSSAAIYYESLISSVISPDEI
ASQILKILESGFSPQSSSPLITLLGTDAYVERRQMAHKSQRKFSVEMLLSFHKLQSRSTS
WSAVFDVIEKFMKCLNTKVTIQEHELKRLCNVNSTILVQATSQVARTMFESAFDLFLFLS
YLVGVGGQVSLLQSDVSRIKLKLFPMIQDILGQWIVLHFVGISPTTPPAMEDFSYQLSYL
QLGIADEVSLHRKLGSSDFTLACLLDFPKSAEGDHLSACFPSTAEVIDLVRQFISSIMRR
NNFDHANSFLGSTINLAAVFVRHGQYEAAQNLLGILDTYLNYARASQTDQDTDIASSARL
HLNGFCLLMLAHDEANIVLRESRVHEAIRCFFRAASGQEAPKALKKFSSETGFQIFGECK
SISLWRLHYYEWAMQKFEQNSMSEGACQFALAALEQVDSIVDLDNGSEVEGLTETAQMIK
GRLWANVFKYSLDLKNFRDAYCAIVSNPDDDSKYVCLRRFIIVLCELGETKVICNGEIPF
TGLLEKVEQELFWKAERSDLSSRPNLYKVLYSFEAYRNNWRKAAAYMYRYFVRLSREGDA
GGSRQLSHVLQEKLHALSTAINSLQLVEPSCAWLDSVCEADDQTSPSKKPRNHLLMENSA
FGTDSELSRLQFCVDIEILEKEYTLTEALYMLNTVNSRSKSHESHSIEALTDILINENLY
DLAFTIVLKFWKESGMKRELERVFAAIAQQCCPNRVGNSGRNFTDTQQLLLLPSSEDDAR
DGGSKTIAVAHQVQGSCQWETLELYLDKYKDLHPRLPVIVAETLLYADPEIELPLWLVQM
FKTTKGGNRMISWGMCGKEADPAALFRLYTNYGRHAEAANLLVEYLDSFASSRPVDVLHR
KKMSAAWFPYTTIERFWCQLEEMQSAGHSADQCDRLKKLLHGALMKHLQQVVVDSEDVLS
SVGGGQGVESQSS
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atggccgcccccgccgccggctcccgcaagatagcgggcaccgaggtccccatcacgggc
tcggacaaggtgcggtggatcgacctaaccgtcccgtcctccccctccgccgcgccggcg
agccccgccgacccgttcgtctccgtgcccccgcgcgctgcctcggggtgccacgtcgta
tcctccggtggcgcatcccaacgataccttgcctggaggattcatgaagaacaccaaaat
gtgctagaggtcattgaactctgtgcttcgaaggagttcccaagctctggactgcggttg
gtattccaggaggctctatgtccattcgcttttatgtgtgaaagtgagggtgccaggcga
ggcgaatctgtatatcttctatatgtgctcactatttctggagttgctcttctgtgcaac
ttgcgcagcccattttcctatgtatctggatcaatactgtctcagaatgatgttcttgag
tttagtcttcaaactcacacacagagtgctaacgttacagctgtacaagcgaaaccaggg
tgtctagtaattgggcggcaagatgggtcaatctgctgttacagtctcggcaaactagct
cctagttcaccaggtttctcaaatgagctccgtgatgatgctggaattgggcgtttgtgg
actctcgtgtcgagaacaaaggctctggggcctgtacaagatatagacacagctactgta
aatgaaagggagctgttgtttgctcttcatttggatggaagtttgcgtgtatgggatatt
tctagtcacacaaaacttcttaattataacgttcactcgaatgattttgaagggcaaccc
tctagggtatgggttggtgaggctgatgatgatcaagagctgatatctttggctgttctc
catcaaggcactatggttccagcttgtgatcgtgttgttgtatatggcttcagttttggt
gttggtgaaaggttcttgctgtctcctgaacctttggtttctgctatacctttgctggag
gggaagctcattgatttgaaaataagcacagaaaagctttggattcttaaagaagtggga
ccaatgctgtatgaaatagtgcagtatgactctgatggtgaggaaatatgttcatatgtg
ctacaagaagatgctatcagtgagcaaatgttccaaagttctgaaagtgcactggatgat
ttggtttggactgctgattcaatattctcatctatgaaggagcatagtttcagttttatc
tcgtcaatgtttctgcggaggctgctgcaaccaggagtgaaccactgttctgctcttcgt
gaaaccttactggagtataaaaggtttctatctgattcggagttccaatcattaactact
agtgggctacggaaagaaatactatccattatagaactcgagggaagttcacagtccgca
agttctactgcttatcactggaaaaagttttctgcacggtatctccataaatggtgcgag
aacaataggccatatgggttgtttcttgatacgaaccgcgaggtgtttggtttagttaga
aagggttcattttctctcttccgttgtttggagggtgtggagcaacttatttatggttcc
tctgatgaactgggaaatctggaaggcctcgaaatgaacttatttgatgatgcatctgat
actgaaacccttattgaagttctcaggtgcatgggccatataaaccatttgcttgggagg
tcttctgctgcaatatattacgagtccctcatcagttctgttatatcaccagatgaaatt
gcttctcagatattaaagattctagagagtggttttagtcctcaatcttcgtctcccctc
attacattacttggaacagatgcttatgtagaaagaaggcagatggcccacaaaagccaa
aggaagttttctgttgagatgctgctatctttccataagttgcaatcaagatccacatcc
tggtcagcagtatttgatgtgatcgagaagttcatgaagtgtttgaatacgaaggtcacc
atacaagagcatgaattgaaaagactttgtaatgtaaattctacgatattggttcaggct
acttcacaggttgcaagaaccatgtttgagtctgcttttgatctatttctgttcctcagt
tatctggttggtgttggtggtcaggtatcattgctgcaaagcgatgtttccaggataaaa
ctgaagttgtttccaatgattcaagacatattgggccagtggattgttctccattttgta
ggaatttcaccaaccacgccaccagccatggaggatttcagctatcaactttcttacctc
cagctaggtatagctgatgaggtatctttgcacagaaagcttggatcctctgattttaca
ttggcttgtttgcttgattttcctaaatctgctgaaggggatcatctgtcagcttgtttt
cctagtacggccgaggtgatcgacttggtcaggcaatttatcagttcgattatgcgcaga
aataattttgaccatgcaaacagcttcttgggttccacaataaatctggcagcagttttc
gtccgacatggtcaatatgaagctgctcagaatcttctgggcattcttgatacatacttg
aactacgcgagagcatcccaaactgaccaggatacggatattgcatcttcggctcgccta
catctcaatggattttgccttttgatgcttgcacatgatgaagcaaacatagttttgaga
gaatccagggtccatgaagctatcagatgcttcttcagagctgcatctgggcaagaagct
ccaaaggcgttgaagaagttctcttcagaaacagggtttcaaattttcggggagtgtaaa
tctatttccttatggaggcttcattactacgagtgggcaatgcaaaaatttgagcagaac
tccatgagtgagggagcatgccagtttgctcttgctgctcttgaacaagttgatagcatt
gttgatttggacaatggaagtgaagttgagggtctcacagaaactgcacagatgattaaa
ggacgactatgggccaatgtattcaagtatagcttggatttgaaaaacttccgagatgcc
tattgcgctatagtctcaaatccagatgatgacagcaagtatgtctgtttgaggcgtttc
atcatagttctttgtgagcttggcgagactaaggtcatctgtaatggtgagataccattt
actggtttgttggaaaaagtggagcaagaactcttctggaaggctgagcgctcagatcta
tcttctagaccaaatctatacaaagtcctttattcatttgaagcctataggaacaattgg
aggaaagcagctgcatacatgtacaggtattttgttagattgagtagagagggggatgca
ggtggaagccgccaactttctcatgtattacaagagaagctgcatgctctgtctactgct
atcaactcgttgcagcttgttgaaccctcatgtgcctggctcgattcagtttgtgaagct
gatgatcaaacttcaccaagcaaaaagcctcgtaatcatcttttgatggagaactctgcg
tttggcacagattcagagctctctagattgcagttttgtgttgacatcgaaattcttgaa
aaggaatatacactaacagaagcactttatatgcttaacactgtaaattctagatccaaa
tctcacgaaagccattctattgaagccctgacggacattcttataaatgagaatttgtat
gacctggcattcaccattgtactgaaattttggaaggagtcaggaatgaaaagagaattg
gaacgtgtctttgcagccattgcacagcagtgctgcccgaacagagtaggcaactcaggg
agaaattttactgacacccaacaactgctactgctaccttcttctgaggatgatgcacgg
gatggcggtagcaagaccattgctgtggcccatcaagtgcagggaagttgccagtgggaa
actcttgaactatatttggataaatataaagatttgcatccgaggttgcctgttattgtt
gctgaaacacttctttacgctgatcctgagattgagctacctctttggctggttcagatg
ttcaagactaccaagggtggaaataggatgatttcatggggaatgtgcggcaaagaggca
gatccagctgcattgtttcgactgtatacaaattatggccggcatgcagaagcagccaac
ttattggtggagtacctggattcttttgcatcatcgagaccggtggacgtgctccaccgc
aaaaagatgtctgccgcctggtttccgtacaccacaatcgagaggttttggtgtcagctt
gaagagatgcaaagtgctggccatagcgccgatcagtgtgatagactcaagaagttgctg
catggagccctgatgaagcacttgcaacaagtggttgtcgattcagaagacgtgctgtca
tctgttggagggggtcaaggagtggagagccaaagcagctga
DBGET
integrated database retrieval system
