Lolium rigidum (rigid ryegrass): 124691565
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Entry
124691565 CDS
T09103
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124691565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124691565
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124691565
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124691565
Complex C
U5 SnRNP specific factors
124691565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_25
Motif
Other DBs
NCBI-GeneID:
124691565
NCBI-ProteinID:
XP_047080808
LinkDB
All DBs
Position
2:35761760..35769858
Genome browser
AA seq
2180 aa
AA seq
DB search
MANLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPETLWGRIDKRSFGDRAV
QAKPPELEERLTKSRKKKERDSSSASAPDADDLPRKRRRRSAAAREESVLSLADDVVYRP
QTKETRAAYEAMLSVIQQQFGGQPMDVLGGAADEVLTILKNDKIKNPDKKKEIDKLLNPI
PTQMFEQFVSIGKLITDFHDASDPASASSGGDGLEATMDDDIGVAVEFEEDDDDEESDFD
QVQDELDEDDDDAAELNRPGGMQMGGELDDDDMQNSNEGLNVNVQDIDAYWLQRKITQAY
ADIDPQQSQKLAEEILKIIAEGDDRDVENRLVMELDYEKFDLIKLVLRNRFKIVWCTRLA
RAEDQEERKKIEEEMMGNPSLVPILEQLHATRASAKERQKNLEKSIRDEAKRLLNNDGAG
ADGPRERRAVDRDTESGWLKGQRQLLDLDNLSFHQGGLLMANKKCELPDGSFRTPHKGYE
EVHVPALKPRPYGTNEKIVKISDIPAWAQPAFAGMQQLNRVQSKVYDTALFKPDNILLCA
PTGAGKTNVAVLTILHQIGLHMKDGEFDNTKYKIVYVAPMKALVAEVVGNLSKRLQDFGL
TVRELSGDQNLTKQQIDETQVIVTTPEKWDIVTRKSGDRTYTQMVKLLIIDEIHLLHDNR
GPVLESIVSRTVRQIETTKEHIRLVGLSATLPNYEDVAVFLRVRSEGLFHFDNSYRPCPL
AQQYIGITVRKPLQRFQLMNEICYEKVMAAAGKHQVLIFVHSRKETAKTARAIRDTALAN
DTLTRFLKDESASQEILGSQAELVKSSDLKDLMPYGFAIHHAGMGRVDREMVEELFADKH
IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTHG
EGIILTGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTIQNAREACSWLGYTYL
YIRMLRNPTLYGLPADIMETDKTLDERRADLVHSAANLLDKNNLVKYDRKTGYFQVTDLG
RIASYYYISHGTISTYNEYLKPTMGDIELCRLFSLSEEFKYVSVRQDEKMELAKLLDRVP
IPVKESLEEPSAKINVLLQAYISRLKLEGLSLGSDMVYIRQSAGRLLRALFEIVLKRGWA
QLAEKALNLCKMIDKQMWSVQTPLRQFPGIPKEILMKLEKKELAWERYYDLSSQEIGELI
RFPKMGKQLHRCIHQLPKLNLSAHVQPITRTVLGFELTITPDFQWDDKVHGYVEAFWVIV
EDNDGEYILHHEYFMLKKQYVDEDHTLHFTVPIYEPLPPQYFIRVVSDKWLGSQTILPVC
FRHLILPEKYAPPTELLDLQPLPVTALRNARYEGLYSAFKHFNPIQTQVFTVLYNSDDSV
LVAAPTGSGKTICAEFAILRNHQKAVSGETNMRVVYIAPIEALAKERFRDWSKKFGEFAR
VVELTGETAADLKLLDKGEIIISTPEKWDALSRRWKQRKHIQQVSLFIVDELHLIGSEKG
HVLEVVVSRMRRISSHIGSNIRIVALSASLGNAKDLGEWIGATSHGLFNFPPAVRPVPLE
IHIQGVDIANFEARMQAMAKPTYTAITQHAKSGKPALVFVPTRKHARLTALDLCAYSSAE
AGGTPFLLGSTDEMDTFIGGVNEETLQNTLRCGVGYLHEGLSDLDQELVTQLFLGGRIQV
CVASSTMCWGRSLPAHLVVVMGTQYYDGRESAHTDYPITDLLQMMGHASRPLQDSSGKCV
ILCHAPRKEYYKKFLFEAFPVESHLHHFLHDHMNAEVVVGVVENKQDAVDYLTWTFMYRR
LNKNPNYYNLQGVSHRHLSDHLSELIETVLNDLESSKCVSVEEDMYLKPLNLGLIAAYYY
ISYTTIERFSSMLTQKTKMKGLLEILASASEYAELPTRPGEEEYIERLVRHQRFSIDKPK
YGDPHVKANALLQSHFARHTVVGNLAADQREILLSAHRLLQAMVDVISSSGWLTLALNAM
ELSQMVTQGMWDRDSVLLQLPHFTKDLARRCLENKEKPIESIFDLAEMSADEMRDLLQLS
NSQLQDIGEFFKRFPNVDMAYEVREGDDIRAGDNVTLQVTLERDMANLPSSEVGPVHAPR
FPKPKEEGWWLVVGDASGSTKQLLAIKRVALQKRARVKLEFTAAAEPGRKDYMIYLMSDS
YLGCDQEYEFTVDVKDAGAD
NT seq
6543 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctcggaggcggcgcggaggcgcacgcgcggttcaagcagtacgagtaccgc
gccaactcgagcctggtgctcacgaccgactcgcgcccgcgggacacgcacgagcccacg
ggcgagccggagacgctctggggccggatcgacaagcgcagcttcggggaccgcgccgtg
caggccaagccgcccgagctcgaggagcggctcaccaagtcgcgcaagaagaaggagcgc
gactcctcctccgcctccgcccccgacgccgacgacctgccgcgcaagcgcaggcgccgc
tctgcggccgcccgcgaggagagcgtgctctccctcgcggacgacgtcgtgtaccggccc
cagaccaaggagacgcgcgccgcctacgaggccatgctcagcgtcatccagcagcagttc
gggggccagcccatggacgtgctcggcggggccgccgacgaggtgctcaccatcctcaag
aacgacaagatcaagaaccccgacaagaagaaggagatcgacaagctcctcaaccccatc
cccacccagatgtttgagcagttcgtctccatcgggaagctcatcaccgatttccacgac
gccagcgatcccgcctccgcgtcctctggtggtgacggtcttgaagcgaccatggacgat
gatattggagttgctgtcgagttcgaagaggacgacgatgatgaggaaagtgatttcgat
caggtgcaagacgagttggacgaggacgatgatgacgcggcggagctgaaccgtccagga
ggcatgcagatgggcggcgagctggacgacgatgacatgcagaactccaacgaggggctc
aacgtgaacgtgcaagacatcgatgcttactggcttcagcgaaagataacgcaagcatac
gctgatatcgacccccagcagagccagaagctcgccgaggagatcttgaagataatcgcg
gagggcgatgacagggatgtcgagaaccgccttgtcatggagctggactatgagaagttt
gacctcattaaactggtactacgcaaccggttcaagatagtctggtgtacccgcctggca
agggctgaagatcaggaagagcggaagaagatagaggaagagatgatgggtaacccaagc
ttagttccgatattggagcagctacatgcgaccagagcctctgcaaaggagaggcagaag
aatctggagaagagtatcagggatgaggcaaagaggcttctaaacaatgatggtgctggt
gctgatggtccgagggagcgtcgggctgttgaccgggatacggagagtggctggttgaag
ggccagagacagttgcttgatcttgacaacctctctttccaccaaggtggtctcctgatg
gccaacaagaaatgtgaacttcctgatggatcgtttagaacccctcataaggggtacgag
gaagtgcatgtgccagcattgaaacctaggccatatggaactaacgagaagattgtgaag
atatctgatatcccagcgtgggctcaaccggcttttgctggaatgcaacaactgaacagg
gttcagagcaaggtttatgataccgccctcttcaaaccagataacatccttctctgcgct
ccaactggtgctggtaaaacaaatgtggctgtgcttacaatccttcaccaaattggtctg
catatgaaggatggtgagttcgacaataccaagtacaaaatcgtctatgtggccccaatg
aaagctttagttgctgaggttgttggaaatttgtccaagcggctgcaagatttcggtctc
actgttagggagctcagtggagaccagaacctgacgaaacaacagattgatgaaacacag
gtcattgttacaacacctgagaaatgggatattgtcacgaggaaatcaggtgaccgaacg
tatactcagatggtaaagcttctgatcattgatgagatccatctacttcacgataacaga
gggccagtcctggagagtattgtttctagaacagttcggcagattgagacaaccaaggaa
catatacgcttagttggtctctctgcaaccctcccgaactatgaagatgttgctgtattc
ttgcgtgtacgctctgaaggtctcttccattttgataacagttacagaccttgtcctctt
gcgcagcagtacattgggatcactgtaaggaagccactgcagaggtttcagttgatgaat
gagatttgttatgagaaagtaatggctgctgctggtaagcatcaagtgcttatatttgtg
cactctaggaaggagacagcaaaaactgctcgtgccatcagagatactgccttagctaat
gacacattgactcgctttctgaaggacgagagtgcaagccaggagattcttggcagtcag
gcagagcttgtcaaaagcagtgatcttaaggaccttatgccatatgggtttgctattcat
catgctgggatgggaagggtggaccgtgaaatggttgaagagctctttgctgataagcat
atacaggtccttgtttcgacagctacccttgcatggggtgtcaacttgcctgctcacact
gttattataaagggtactcagatttataatccggaaaaaggtgcttggacagaattaagt
cctctggatgtcatgcagatgcttggtcgtgcaggtagacctcagtatgacacacacgga
gagggaataatcttgactggccacagtgaattgcaatactacctctcccttatgaaccaa
cagctgcctattgagagtcagttcatatccaaattggcagatcaattaaatgcagagatc
gttttgggaactattcagaatgctagggaagcatgctcgtggcttggctacacttacctc
tacatacggatgcttcggaatccaacactgtatggtttaccagcagatatcatggagaca
gacaaaacactagatgaaaggagagctgacttggtacactctgctgcaaatttgttggat
aagaataatttggtgaagtatgacaggaaaacaggatactttcaggttactgaccttgga
aggattgccagttattactatattagtcatgggactatttcgacatataatgagtatctc
aagcccacaatgggtgatattgagctctgtcgcctgttctccctgagtgaagagttcaag
tatgttagtgtcaggcaagatgagaaaatggagctggcaaaacttttggatcgtgtgcca
attcctgtaaaagagagtctggaggagcccagtgcaaagattaatgttctgctgcaagca
tatatatctaggctgaaattggagggcctctctcttggttctgatatggtctacatcaga
cagagtgctggacgcctcttacgagcactatttgagatagttttgaagagaggatgggct
caattagcggagaaggctctcaatctttgcaagatgattgataagcagatgtggagtgtc
caaacacccttgcgccagtttcctggtattccaaaggaaatcctgatgaaactggagaaa
aaagagttggcttgggagaggtactatgacctatcatcacaggaaatcggtgagctaatt
cgtttcccaaagatggggaagcagctgcacaggtgcatccaccagttaccaaagttgaac
ctgtctgcccatgttcaacctattactcgcacagttttgggttttgaattgacaataaca
cctgatttccagtgggatgataaggtacatggatatgttgaggccttttgggttatagtt
gaggacaatgatggcgagtacattcttcaccatgagtacttcatgcttaagaagcagtat
gtggatgaagatcacacacttcactttacagtgccaatatatgagccattgcctcctcag
tattttatacgtgttgtgtctgacaagtggcttggttcacagacaattcttcctgtctgt
tttaggcacttgattcttccagaaaaatatgctcctccaactgaattgcttgatctgcaa
ccgctacctgttactgcattgaggaatgcacgatatgaaggtctttatagtgcttttaaa
catttcaaccccatccagactcaagtgttcactgtcctgtataacagtgatgacagtgtg
ttggttgctgcgccaacaggcagtggcaagacaatatgcgcagaatttgctatactaagg
aaccatcagaaggcagtatctggggaaactaacatgcgggttgtgtatatagctcctatt
gaggctcttgcgaaagaaagattcagggactggtcaaagaaatttggagaatttgcccgt
gtagtggagctaactggtgaaactgcagctgatttgaagcttcttgacaaaggggagatc
attattagtactcctgaaaagtgggatgcactttctcgacgctggaagcagcgaaagcac
atccaacaagtcagcttatttattgttgacgagcttcatttaattggatctgaaaaggga
catgtcctggaagtcgttgtttctcggatgaggcgtatttcaagccatattggcagtaac
atccggattgtggcgctttcagcatcacttggaaatgctaaagatcttggagaatggatc
ggtgccacctctcatggtcttttcaacttccctccagcagtgcggccagttccattggaa
atacatattcagggtgtggatatagcaaattttgaggcaagaatgcaagcaatggcaaag
cctacatacactgctatcacacaacatgcaaagagtggtaagcctgccctggtgtttgta
ccgacacgtaagcatgcaaggttgactgcattggacctgtgtgcatactcaagtgctgag
gctggtggaacgccattccttcttgggtcgacagatgagatggatacttttattggaggt
gtcaatgaagaaacacttcaaaatacactgagatgcggtgtgggctacttgcatgagggc
cttagtgaccttgaccaggaacttgtaacccagcttttccttggtgggaggatccaagtg
tgtgttgcaagtagcacaatgtgctgggggagatcgttgcctgctcatctagttgttgtg
atgggaacccaatattatgatggcagggagagtgctcatactgattatccaatcactgat
ctgctacagatgatgggtcacgctagcaggcctcttcaggatagctccgggaagtgtgtt
atattgtgccatgcacctcggaaggaatactacaagaagttcctctttgaggccttccct
gtggagagtcatcttcaccatttcttgcatgaccatatgaatgctgaggttgttgtcggc
gttgtagaaaacaagcaagatgccgtggactatcttacctggactttcatgtaccggcgg
ctgaacaagaaccctaactactacaatctgcagggtgtaagtcacaggcatctgtcagat
catctttctgagctaattgagacagtgttgaatgacctagaatcaagcaagtgtgtatct
gtagaggaggatatgtacctgaagccgctcaaccttggtctcattgctgcatactactac
attagctacacgactattgaacggttcagttcgatgctcactcagaagacgaagatgaaa
ggcctcctggaaattctagcttctgcatcagagtatgcagagcttccaactcgcccaggt
gaagaagaatatattgagaggctagtccgtcaccagagattttctattgacaagcccaag
tatggtgatccacacgtgaaggccaacgctctactgcaatcccactttgcaaggcacacg
gtggtagggaacctggcagctgaccagcgggagatcctcctttctgcccacagattgctc
caggcaatggttgacgttatctccagcagtggatggctcactcttgctctgaatgcaatg
gagttgagtcagatggtgacccaaggcatgtgggatcgtgactctgtgctgctccagctt
ccacacttcaccaaggacctagcccggagatgcctggaaaacaaagagaagcccatcgag
agcatctttgatctggctgagatgagtgctgatgagatgcgggatctgctgcagctatcg
aactctcagctgcaggacatcggcgaattcttcaaacggttccccaacgtcgacatggct
tatgaggtccgcgagggcgacgacatcagggctggcgacaacgtaaccttgcaggtcact
ctggagcgtgacatggcgaacctgccatcttctgaggttggcccggtccacgcccccagg
ttcccgaagcccaaggaggaaggctggtggctggtggtcggtgacgcctctggctccacc
aagcagctgctggcgattaagagggtcgccctccagaagagggcacgtgtgaagcttgag
ttcaccgccgccgcggagccagggaggaaggactacatgatctacctgatgtccgactcc
tacctgggctgtgaccaggagtacgagttcaccgtcgacgtgaaggatgctggagcagat
tga
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integrated database retrieval system
