Lolium rigidum (rigid ryegrass): 124691574
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Entry
124691574 CDS
T09103
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124691574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124691574
Spliceosome [BR:
lrd03041
]
Complex A
U1 snRNP components
U1 related factors
124691574
Complex B
124691574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
124691574
NCBI-ProteinID:
XP_047080820
LinkDB
All DBs
Position
2:complement(36556644..36568547)
Genome browser
AA seq
1000 aa
AA seq
DB search
MSSNMQTTGPPQPPRPPMMGSAAPQQNMGPPMPMQFRPVGPPQQPPQFMQQAPQQFRPAG
QPMPGVNMGMPGQMPHFLQPGQHMPHSGHIPPASQAVPMAYQAARPMSSAPMQQPPQAVF
PGGHMPTMGAPMPPPSYTFQPTSVPPVAQPWGTAPGQGLPLVPPMVQPGHQSLSASSPPV
SSTDPSSSDWQEHSSGDGKKYYYNKRTKQSSWEKPAELMTPLERADASTEWKEFTTAEGR
KYYYNKVTKQSKWTIPDELKIARELAEKISNQQPDRETETTTDAPTGSASVPAEPSSLPP
NQSSSLVGISASSTQDTVANLPPGAPPVAGLSHNGDISSSYGSMQNGGASAAAVTPVTSS
MGVSSVASDAETSRNNYESSSLTSTTDTKVGASAEDLEEAKKMMPTAGKVNVTPLEDKTN
EEEPVIYANKLEQKNAFKSLLESANVEADWSWEHAMRVIINDKRYGALKTLGERKQAFNE
YLNQRKKIEAEERRVKQRKARDDFLTMLEESKDLTSSTRWSKAITMFEDDERFRAVDRPR
EREDLFENYLVDLQKKEKAKAAELHKRYVVEYRAFLESCDFIKANSQWRKVQERLEDDER
CFRLEKIDRLDVFQEYIRHLEKEEEEQRRMQKEKTRRQERKNRDEFRKMLEEHVADGTLN
AKTHWRGYCAQVKDSHAYLAVASNTSGSMPRELFNDVMEELDKQYQDDKTLVKDEMKSGK
IHMTASWALEDFQAAVTEDEKCKGISNINIKLIYEDQIEKLKEKELKEAKKRQRLGDNFL
DLLYSIKEITAASTWDDSKALFDDTQEYKDLGGETYARELFEEYIVRLKERFKEKERMRE
EEKAKKEKDREEREKKKDKEKEKERKEKDRKEKERDREKEREKEKGKDRSKRDEMEIDGD
DVEIHGSKEKKREKDKEKKHKRRHHDTTDDLSSDRDEKDESKKSRRHSSDRKKSRKHTHA
SDSDTENRHRRHRRDRDSSRKNGVNEELEDGELGEDGEIH
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtaatatgcagactactgggccgcctcagccccccaggcctcctatgatgggt
tctgctgctccacaacaaaatatgggaccaccaatgcccatgcagtttaggccagtgggc
ccgccgcaacagcctcctcagttcatgcaacaggcgccgcaacagtttagacctgctggt
cagcccatgccaggagttaacatgggcatgccagggcagatgccacattttctgcaacct
gggcaacatatgcctcactcgggccatattccgcctgcatcacaggctgtccctatggcg
tatcaggcagctagacctatgtcatcagcgcctatgcagcagccgccgcaagctgtattc
cctggtggacatatgcccaccatgggcgctcctatgccgcctccttcttatacttttcaa
ccaacatcggttcctcctgtagctcaaccctggggtacagctccgggtcagggcttacct
cttgtgccaccgatggtgcagcctgggcatcagtctctgtcagcttcatcacccccagtt
agctcaactgacccaagctcttcggattggcaagagcacagttcaggggatggaaagaag
tattactacaataagaggacgaagcaatcaagttgggagaaacctgctgagttgatgaca
cctttggagcgggctgatgcctcaactgaatggaaagaatttactacagcagaaggacga
aagtactattacaacaaagtgacaaagcaatccaaatggactattcctgatgagcttaag
attgcacgtgaattagcagaaaagatatcaaatcaacagcctgaccgggagaccgaaacc
actactgatgcccctactggttctgcttcagttcctgcggagccttcctctttacctccc
aaccagtcttcatctttagttggaataagtgcttcaagcacacaagatacggtagcaaac
ttgcctcctggtgctcctcctgttgctggcctatcgcacaatggggatatatcttcttcc
tatggttccatgcaaaatggtggagcaagtgctgctgctgtcacccctgttacatcgagc
atgggagtttcatcagttgcaagtgatgcagagacaagcagaaataactacgaaagctcg
tctctaacgagcactaccgacaccaaagttggagcatctgctgaagatttggaggaggcc
aaaaagatgatgccaactgctgggaaggtcaatgttactccactggaggataaaacaaat
gaagaagaacctgttatttatgctaataagttggaacaaaagaatgcttttaagtccctg
cttgaatcggcaaatgttgaggctgattggtcatgggagcatgctatgagagttattata
aatgacaaaagatatggtgctttgaaaactcttggagagagaaagcaagctttcaatgag
tacttaaaccagcgtaaaaagattgaagctgaggagaggcgtgtcaagcagaggaaagca
cgcgatgattttctcacaatgctggaagaatctaaggaccttacatcctcgacaagatgg
agcaaagcaataactatgtttgaggatgatgaaaggttcagagctgttgaccgcccaagg
gagcgtgaagatttatttgagaactatcttgtggatctacaaaagaaggaaaaagcaaag
gctgctgaattgcacaaaagatacgtggtggaatatagagcctttcttgaatcttgtgat
ttcatcaaggcaaactcccagtggagaaaagttcaagagcggctagaggatgacgaacgc
tgtttccgacttgagaagattgatcgcttggatgttttccaagagtatatacggcatctg
gagaaagaagaggaagagcagaggagaatgcagaaggagaaaacaaggagacaggagcgg
aaaaaccgcgatgagttccgcaagatgttggaagaacatgttgctgatggcacacttaat
gcaaaaactcattggcgtggctactgtgcacaggtaaaagattcacatgcttacctggct
gtagcttcaaacacgtctggttccatgccaagagagctctttaacgatgtgatggaggag
cttgataaacagtatcaagatgacaagactttagttaaagatgaaatgaagtctggaaag
attcatatgacggcctcatgggcactagaagacttccaagccgccgttacagaggatgaa
aaatgtaaaggaatatcaaacataaatattaagcttatttatgaggaccaaattgaaaag
ctcaaggaaaaggaactaaaggaggctaagaagcgtcagcgattgggtgataattttctg
gatcttctatactcaatcaaggaaataacagctgcttcaacatgggatgattctaaagca
ttgtttgatgatacccaggagtacaaggatttgggtggtgagacatatgctagagaactt
tttgaagagtatattgtccgcctcaaagaaaggtttaaagagaaagagcgcatgagggag
gaggaaaaggcaaaaaaagagaaagaccgtgaagagagagaaaagaagaaagataaagaa
aaagaaaaagaaaggaaggagaaagatcgcaaagaaaaagaacgagatcgagagaaggaa
agagaaaaggaaaaaggaaaggatcggtcaaagagagatgaaatggagattgatggtgat
gatgtggagattcatggctcaaaggaaaagaaacgggagaaggataaagaaaagaagcat
aaaagacgccaccatgacaccacagatgatctaagctcagatagagatgagaaagatgag
tcgaagaagtcccgaaggcatagcagtgatcgcaagaaatctaggaagcatacccatgct
tcagactcagatactgaaaaccggcatagaagacatagaagggaccgagacagttcccgc
aagaatggtgtaaatgaggagcttgaagatggcgagcttggagaagacggggagattcat
tag
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