Lolium rigidum (rigid ryegrass): 124692191
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Entry
124692191 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124692191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124692191
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124692191
Spliceosome [BR:
lrd03041
]
Complex A
U2 snRNP components
U2 related factors
124692191
Complex B
124692191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
124692191
NCBI-ProteinID:
XP_047081471
LinkDB
All DBs
Position
2:complement(104025735..104030356)
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AA seq
1079 aa
AA seq
DB search
MSSSEDERGTASKHHHRDKEKNREHSSSRRHRESRSSSRHHRDDRDGERDRDRDRKHRDK
ERDREERKARERAEKEREKEEKKERAREREREEMEMELEKEREREREKEREKEKERERAR
RREERDREKEKSKRRDVVDDEENGDRDRKHRRRSSHHHHHRRVAEPEAAPLTREEEEDGE
EAQRRRQKKKEEEMEAEQQRLDDEMERRRRRVKEWQEKKRLEQQLQQQDDGASGVATSME
ADGGSKSGKKWTLDGEESDEEDAKKSDEEDANKSEENGGTDTGAMDVDLPSSSIHGNSGA
AMEEDEIDPLDAFMNSMVLPEVAKLESAPTATASVPAANAGDKNDKSVKSATSNGDKKRP
IKAMGRIMQGDDSDSDYDDADNDEAGSDDEDDTEFIKRVKKTKAEKLVIVDHSKIDYQPF
RKNFYIEVKDITRMPADEAAAYRKLLEIKVHGKDVPKPIKTWIQSGLTSKLLDTIKKLGF
EKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMA
PTRELVVQIYSDIKKFSKALGINCVPIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCT
SSGKITNLRRVTFLVLDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILAR
KVLTKPIEIQMGGRSVVNKDITQLVEVRPESERFFRLLELLGEWIAKGKILVFVHSQDKC
DSLLKELFQHGYPCLSLHGGKDQNDRESTLADFKSNVCSLLIATSVAARGLDVKDLELVV
NYDVTNHYEDYVHRVGRTGRAGRKGCAVTFISEEEERYAPDLVKALELSEQAVPQDLKAL
ADRFMSKVKQGTEQAHGTGYGGSGFKFNEEEEEARKSAKKAQAREYGYEDDKSDSDSDEE
GGVRKKGGDVAAQAIAAAQAAATLAAARQQVPATVANPLLPLPVAPNQQNNDATLRALQA
AFNVQQSLARIQAHAVPEHYEAELEINDFPQNARWKITHKETLGPIQEWTGAAITTRGTF
IPQGKVVGANERKLYLFIEGPNESSVKKAKTELKRVLEDCANHALNLPGSAQTGKYSVI
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccagcgaagacgagcgcgggaccgcctccaagcaccaccaccgggacaaggag
aagaaccgtgagcactcctcgtcccgccgccaccgtgagagccgctcctcctcccgccac
caccgcgatgacagggacggcgagcgggaccgagatcgcgaccgcaagcacagggacaag
gagcgggatcgcgaggagcggaaggcgcgggagcgggcggagaaggagcgcgagaaggag
gagaagaaggagagggcgagggagagggagagagaggagatggaaatggaattggagaag
gagagggagagggagagggagaaggagagggagaaggagaaggagagagagagggcgcgg
cgtcgagaggaacgcgacagggagaaggagaagtccaaaaggcgggatgtggtcgacgac
gaggagaacggggaccgcgaccgcaagcatcgccgccggtcctcgcaccaccatcaccac
cgtcgtgttgcggaacctgaggcggcgccactgaccagggaggaggaggaggatggcgag
gaggcacagaggcggcggcagaagaagaaggaggaagaaatggaggctgaacagcagcgg
ctcgacgacgagatggagcgtcgtcgccgccgcgtaaaggagtggcaggagaagaagcgc
ctcgagcagcagctgcagcagcaggatgatggtgccagtggtgttgccacctccatggag
gctgacggtggaagcaagtctgggaagaagtggaccttggatggtgaggagtcggatgag
gaggatgccaagaagtcggatgaggaggacgccaataagtcagaggagaatggtggcacc
gacaccggtgccatggatgttgacttgccttccagcagtattcatgggaatagcggggct
gctatggaggaggatgagattgatccccttgatgcgtttatgaactccatggtgttaccg
gaggttgcaaagctcgagagtgccccaacagcaacggcgagtgtgcctgctgccaatgca
ggtgacaagaatgacaagagtgtgaagtctgccacgagtaacggggataagaaaagacca
atcaaggcgatgggaagaattatgcaaggggatgactcagactcagattatgacgatgct
gataatgatgaggctggttcggatgatgaggatgacacggagttcataaaacgtgtcaag
aagacgaaggcagagaagttggttattgttgaccattccaagattgattaccagccattc
cgtaagaatttctatattgaggtgaaggatatcacaaggatgccagcggatgaagcggct
gcctaccggaagctgttggaaatcaaggtgcacgggaaagatgtccccaagccaatcaag
acgtggatacagagtggtctgacaagtaagctacttgacaccatcaagaagcttggtttc
gagaaaccgatgcctatacaggcacaggcgttgccaatcataatgagtggacgcgattgt
attggggttgcaaagactggatctggtaagactctagcatttgtcttgccgatgctgagg
catgtcaaagatcaaccacccgttgtgcctggggatggccctattggtctcattatggct
cctacaagagagctcgtggtgcagatatattcagacataaaaaagttctctaaggcactt
ggcatcaactgtgttcctatatacggaggttctggggttgcccagcagatcagtgaactg
aagcggggtgctgaaattgttgtttgtactccaggcaggatgattgatatcctttgcact
agcagtggaaagattactaaccttcgaagagttacattcttagtgctggatgaagctgat
aggatgtttgatatgggttttgagcctcaaattactcgaatagttcagaacacccgtcca
gataggcagactgtccttttctctgctacttttccacggcaggttgagatactcgcacgt
aaggtgctgacaaagcccattgagattcagatgggtgggaggagtgtcgtgaacaaagat
atcacacaactggttgaggtgcgaccagaaagtgagaggttctttaggctgttggagttg
cttggggagtggattgcgaagggaaaaattcttgtgtttgtacactcacaagataaatgt
gattctctacttaaagagctgttccagcatgggtacccatgtttatctctacatggtgga
aaggatcaaaacgatcgtgaatcaactcttgcggatttcaagagtaatgtatgcagcctg
ctgattgctactagtgttgctgcaaggggtttagatgtgaaagatcttgagctggttgtc
aattatgatgtcactaatcattatgaggactatgttcatcgtgttgggcgaacgggtcgg
gctggtaggaagggctgtgcggtgacttttatatctgaggaagaggaacgctacgcacca
gaccttgtcaaggctttggagctatctgaacaggctgttccacaagacctgaaagcctta
gcggatcgatttatgtcaaaggttaagcagggaactgagcaggcccatggaacaggctat
ggtggaagtggtttcaagttcaacgaagaagaggaggaagcacggaaatccgcgaaaaag
gctcaggcacgggaatatggatatgaggacgacaagtcagattcagattctgatgaggaa
ggaggtgtacgtaaaaaaggaggtgacgttgcagcacaggctattgctgctgctcaagct
gcggctactttggctgccgccaggcagcaagtaccagccacagtggcaaaccccttgctt
cctctgccggttgcacctaaccaacaaaacaatgatgctacattacgtgcacttcaggct
gcatttaacgtgcagcaaagtctggcaaggatacaggctcatgcagttccagaacactat
gaagctgagcttgagattaatgatttcccacaaaatgctcgctggaagatcacgcacaaa
gagacattaggtcccattcaggaatggactggagctgcgattactacaaggggtaccttt
attcctcaaggcaaagttgttggtgctaacgagcgcaagctgtacctgttcatcgaaggc
cccaatgagtcttccgtcaagaaggcaaaaacagaactgaagcgcgtccttgaggattgt
gccaaccatgcactgaatcttcctggttctgctcaaaccggaaagtactctgttatttga
DBGET
integrated database retrieval system
