Lolium rigidum (rigid ryegrass): 124692275
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Entry
124692275 CDS
T09103
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03440
Homologous recombination
lrd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124692275
03450 Non-homologous end-joining
124692275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrd03032
]
124692275
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124692275
DNA replication proteins [BR:
lrd03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
124692275
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
124692275
BRCA1-C complex
124692275
NHEJ (non-homologous end-joining)
MRX complex
124692275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SbcC_Walker_B
SMC_N
Rad50_zn_hook
AAA_29
ABC_tran
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
124692275
NCBI-ProteinID:
XP_047081570
LinkDB
All DBs
Position
2:complement(118126469..118148354)
Genome browser
AA seq
1315 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSR
SGHTFVHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTFRLKLENLHTLKDQAYRLHDSIAQDQEKSDALKT
QMEDLKTNIEAVESKIRHTGTGMNELRKLQEQISTKATARSTYFTLQQQQYAALSEENED
TDEELKEWQTKFEERITLMETKIGKLEREMNDEKTSTSSLSVTMNDLTLEIGKLQAEANA
HMSVKHKRDSAIRNIFTKHNLGTIPDALFTDDVAMNLTNRIKARLSNLEDDLQDKKKSND
THLEFLWERYLRVNARYSEVDGQIQSKRESQVGISRRMKDKENERDAAEMELSKYNLARI
DERERHMQIEVERKTLALGERDYDLIISQKRPEIYTLDHKIKALYREKDNITNDADDRVK
LELKKDELEKCKKKRKKIYDEHKDKIKSVLKWLPSEKDLKKEITQAFGSVDADYNGLNSK
SQEAEQLLKFAQMKVDGARSRLSKFQKDLDAKRKHLDAKLQSITKVSVDINKYPKILKDA
MDDRDKHRNQYNLAKGMRIMYDPYEKIARDSHKCPCCDRAFTPDEEDWFVKKQRATGTSS
AEHMKVLEIVKSDAEDFFKQLDDLRGIYDEYVKLGKEAIPLAEKDLEQLLADESEKAQTF
EDLVSVLAQVKMDRDGVEDLLHPIETIDRHVQEIQDLEPQVQDLEYKLDSRGQGVRSLEE
IQLELNSVQRARDTLIGEVDHLRDQQKILTEDLSNAQMRWHALREEKVSASSIVDKFKKA
EQDLVHIAEEKEQLNLDQKHLEEALVPLSEERESLLQEYKALKERLEQEFEQLAERKRGF
QQEIDALGTLNTRIKEYLDSKKAEKLNELQEKHRLNLSELQKHEARKQDISAELDRSKEV
LRTQDQFKRNIDDNLNYRKTKAEVDRLTHDIELLEDNVLSIGSMSTIEADLKRHAQEKER
LLSEYNRCQGTISVYQSNISKHKLELKQTQYKDIEKRYFNQLLQLKTTEMANKDLDRYYA
ALDKALMRFHTMKMEEINKIIKELWQQTYRGQDIDCISINSDSEGAGTRSYSYRVVMQNG
GAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLR
IMESRKGQENFQLIIITHDERFAQLIGQRQLAEKYYRVSKDELQHSKIEAQEIFD
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgtggacaagatgctgatcaaggggatccggagcttcgacccggagaacaag
aacgtcatcaccttcttcaagcccctcaccctcatcgtcggccctaacggcgccggcaaa
accacgatcatcgagtgcctaaagctatcttgcaccggcgagttgccccccaactcccgc
tccggccacaccttcgtccacgatcccaaggtagcaggtgaaaccgaaacaaaagggcaa
attaagctgcgttttaagacagcagcaggaaaagatgtggtctgcatccgctctttccag
cttacccagaaggcatcgaagatggagtttaaagcaatcgagagtgttctccagactata
aatccgcacacgggcgagaaggtttgtctcagctacagatgcgctgatatggatagggag
attccagccctaatgggtgtttcaaaggctatactggagaatgttatatttgtgcaccaa
gatgagtccaattggccattgcaggacccgtcaacacttaagaaaaagtttgacgacatc
ttttctgctacccgctataccaaagctctcgaagtcataaagaaacttcacaaggaccaa
gcacaagaaatcaagacttttaggttaaagctggagaaccttcatactcttaaagaccaa
gcatacaggcttcatgacagtattgcacaagatcaagagaagtcagatgccctgaaaact
caaatggaggacctgaaaacaaacatcgaagctgttgaaagcaaaatccgtcatacagga
acaggtatgaatgaattgaggaaactgcaggagcaaattagcaccaaggcaactgctaga
agtacatattttacacttcagcagcaacagtatgctgctctttctgaggaaaatgaagat
accgacgaggaactgaaggagtggcaaacaaaatttgaagaaagaattacattaatggaa
acgaaaatcggtaaactagaacgggagatgaatgatgagaagacaagtacctcctcgctg
tctgtgaccatgaatgatttgacacttgaaataggaaagctccaggcagaagctaatgct
cacatgtccgtgaagcacaaacgagactcagccatcaggaacatattcactaaacataat
cttggtacaatccctgatgctctgtttactgatgatgttgccatgaaccttacaaacaga
attaaagcaagattatcgaatctcgaggatgatttgcaggataagaagaaatctaatgat
acacatctagagtttctttgggaacgttatcttagagtaaatgctcgctactctgaagtt
gatggccagatacaatctaagagagaatctcaggtaggcatttcgaggcgcatgaaagat
aaagagaatgagcgcgatgctgccgaaatggagctttcaaagtataatctggcccgtatt
gatgaaagggagcggcatatgcaaatcgaagttgagaggaagacacttgccctgggagaa
agagactatgatttgattataagtcagaagcgtccagagatatatacgttggatcacaag
ataaaagcactttaccgggagaaggataacataactaatgacgctgatgacagagtaaaa
ctagaactgaagaaggatgagttggaaaagtgcaaaaagaaacgtaaaaaaatatatgat
gaacacaaggacaaaattaaaagtgttcttaagtggcttccttctgaaaaggatctcaag
aaggagattactcaagcttttgggtctgtagatgcggattacaatggattgaactcaaaa
tcccaggaagcagaacaactgttgaaatttgcacagatgaaagttgatggtgctagaagc
cgattgtcaaagtttcaaaaagatttggatgccaaaagaaagcatctggacgcgaaactt
caatcaattactaaggtttctgttgacatcaacaagtaccccaagatactgaaagatgcc
atggacgatagagataaacacagaaatcagtacaatcttgcaaagggaatgcgaataatg
tatgacccttatgaaaaaattgcccgtgattctcacaagtgcccttgttgtgatcgcgct
ttcacacctgatgaagaggactggtttgtaaagaagcaaagggcaacaggtacaagttct
gcagagcatatgaaggtgctggaaattgtgaaatcggacgctgaggactttttcaagcaa
ttggatgatctccgtgggatttatgatgagtatgtgaagctggggaaagaggctatacct
ttagcagagaaggatttggaacaacttttggcggatgaaagtgagaaggcgcaaacattc
gaagatcttgtcagtgttcttgcccaagttaaaatggacagggatggagtggaagacttg
ttacatccaattgaaactattgacaggcatgtgcaagaaatacaggacttagaaccacaa
gtccaagatcttgaatataagcttgattctcgtggccagggtgttagatctctggaggaa
attcagctggagctgaactctgtgcagagggcaagggacacattgattggtgaagttgat
catctcagggatcaacaaaaaatacttactgaagatctttcaaatgctcagatgcggtgg
catgctcttagggaagaaaaagtaagtgcttcaagtatagtggataagttcaaaaaggct
gaacaagatttggtacatattgccgaggaaaaagagcaactgaacctagatcagaagcat
ttagaagaggctcttgttccattgtcagaagagagagaaagcttgttacaagagtataaa
gctttgaaggaaaggcttgagcaggagtttgagcagctggcagaaagaaaaaggggattc
cagcaagaaatcgatgcacttggaactctaaacacacgaatcaaagagtacctggattca
aagaaagcagagaagcttaatgaattgcaggaaaagcataggctgaacttgtccgagtta
cagaagcatgaggcaagaaagcaagacatatcagctgagctagacaggagcaaagaagta
ttgcggacccaagatcagtttaaaagaaacattgatgacaacctgaactacaggaaaaca
aaggccgaagtggatcggcttacgcatgatattgagttacttgaagataatgtgctttcc
atcggcagcatgtctactatagaagctgatcttaaacgtcatgctcaagaaaaagaaagg
cttctttcagagtataataggtgtcaaggaacgatttctgtttatcaaagtaatatttca
aagcacaaacttgagcttaaacagacgcagtacaaggatattgagaagagatattttaat
caacttctccaacttaagacaactgagatggcaaataaggacttggaccgatactatgct
gctttggacaaggctctcatgcggttccataccatgaaaatggaggagatcaataaaata
ataaaggaattatggcagcagacatacagaggccaagacatagattgcataagcatcaat
tctgattctgagggtgctggcactcgatcgtatagttatcgtgttgtcatgcaaaatggt
ggtgctgagctggaaatgcgagggcgatgcagtgctggtcagaaggtgcttgcttctctt
ataatcagactagcactggcagaaacgttctgtctgaattgcggcatattagctttggat
gagccaaccaccaatctagatgggccgaatgcagagagcctagctgctgccctattgaga
ataatggagagcaggaaaggccaggagaatttccagctaattataatcactcacgatgag
aggtttgctcagcttattggtcagaggcagcttgccgagaagtattacagagtctccaag
gatgaactacaacacagcaaaattgaagcccaagagatttttgactga
DBGET
integrated database retrieval system
