Lolium rigidum (rigid ryegrass): 124692436
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Entry
124692436 CDS
T09103
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124692436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124692436
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124692436
Spliceosome [BR:
lrd03041
]
Complex C
Other components
Step II factors
124692436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
S1
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
AAA_16
Sigma54_activ_2
DUF6623
GIPC1_GH2
nSTAND3
T2SSE
TsaE
Motif
Other DBs
NCBI-GeneID:
124692436
NCBI-ProteinID:
XP_047081773
LinkDB
All DBs
Position
1:248784213..248787662
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AA seq
1061 aa
AA seq
DB search
MAGASEAMRRLTDLSLVSKVCSELEAHGGVGDRDLAEFIVHLARRSPSVADFHARLRDHD
FQAPDYLARTLHTVIHAIPAAAPAPAPAPQNPASDDGEEEEDDGAADPELHLVYHGRVTR
VVDAGCFVRLDGARGREGLVHASRMPALAAVKRGQGVFVKVVSLDWGNLALSMLDLDQET
GREIPPPARRQSDDDAVPRANRSAAPASTSGKRVGLSGIVIAEEGPPAPRRRARRMSSPE
RWELKQLIASGALNARDYPAALDDEGTQYQSEEEEMEEELEIELNEDEPPFLSGQGRSSV
ELSPVRISRNPEGSLSRAAALQAALVKERRDIQSQEQRAMLDSIPKDLNRPWEDPVPDAG
GRCIAQELRGAGLSARSMPEWKKESYGKAVTFGQRSSLSLQEQRQSLPIYRLKNELIEAV
HRNLVLVVIGETGSGKTTQVTQYLAEAGYTAGGKIACTQPRRVAAESVAKRVAEESGCRL
GEEVGYCIRFDDRTGPDTVVKYMTDGMLLREIMVDRNLSGYSVIMLDEAHERTIYTDILF
GLLKKLIRRRDDLKLIVTSATLDAEKFSGYFFDCNIFTIPGRTFPVEILYAKQPQSDYMD
SALRTVLEIHMSEPEGDILLFLTGQEEIDHACSYLHEKMQALGKDAPDLLIYAAYGALPS
EMQSKIFEPTPPGKRKVVVATNIAEASITIDGIYYVVDPGFAKVNVYNPKRGLDSLVITP
ISQASAKQRAGRAGRTGPGKCYRLYTECAYRNEMPPTSTPEIQRINLGWTVLNMKAMGIN
ELGAFDFMDPPAPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPQEPPLSKMLLASVD
LGCSDEIVTIIAMIQTGNVFYRPREKQTQADRKRGNFFQPEGDHITLLTVYQAWKAKQFS
GPWCVENFLQISSLRRAQDVRKQLLEIMDKYRLDVVSAGNDLTKVRRAITAGFFFNTARK
DSQGGGYRTLADNQQVYIHPSSALFHQQPQWVIYNEIVMTSKEYMREVTAISPAWLVELA
PRFYKSIDPAKMSKRKRQERLEPLHDRYNEPNSWRLSKRHG
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggcgagcgaagcgatgcggcggctcaccgacctatccctcgtctccaaggtc
tgctccgagctggaggcccacggcggcgtcggcgaccgcgacctcgccgagttcatcgtc
cacctcgcccgccgctccccctccgtcgccgacttccacgccaggctcagggaccacgac
ttccaggcgccggactacctcgcccgcaccctccacaccgtcatccacgccatccccgcc
gccgctcccgctcccgctcccgccccccaaaaccccgcctccgacgacggtgaggaagag
gaggacgacggcgctgcggatccggagcttcacctggtgtaccacgggagggtcacgcgg
gtggtggacgccgggtgcttcgtgcgcctcgacggcgcgcgcggccgcgaggggctcgtc
cacgcctcccggatgcctgccctcgccgccgtgaagcgcggccagggggtgttcgtcaag
gtcgtctccctggactgggggaacctagcgctgtcgatgctggacctcgatcaggaaact
gggagggagatcccgccgccagcgcgtcgtcaatctgatgatgatgctgttccgagggcc
aatcgatctgctgctcctgcctcaacctctgggaagagggttgggctgtcaggaattgtg
attgccgaggaggggccgcctgcgccgcggaggcgggcaaggcggatgagctccccggag
aggtgggagctcaaacagctgattgcttccggggcactgaatgcgagggactaccccgct
gcgctcgatgatgaggggacacagtaccagtcagaagaagaagaaatggaggaggagctc
gagattgagctcaacgaagacgagccaccattcttatctggacagggccgctcctcggtt
gaattgtctccggtgaggatttccaggaaccccgaggggtcactgagccgagcagcggcg
ctgcaagccgcgcttgtcaaggagcggcgtgacattcaaagccaggagcagagagcaatg
cttgattccatccccaaggatctcaatcggccatgggaagatcctgtgcccgatgccggt
ggccgatgtatcgcgcaggagctgaggggcgccggcctatcagcgcggagcatgccagag
tggaagaaggagtcttatgggaaggctgtaacgttcgggcagaggtcgagcctttccctg
caggagcagaggcagagccttccaatttacaggctcaagaatgagctcatcgaagctgtt
catcgcaatcttgttttggtggttatcggcgagacggggtcggggaaaaccacgcaggtt
actcagtaccttgccgaggcaggctacactgcaggtgggaaaatcgcgtgcacgcagcct
cgcagggttgctgcggagtcggttgcaaagcgggtagcggaggagtctggttgtcgattg
ggagaggaagttggttactgcatacgttttgacgatcgcactggacctgatacggtcgtc
aagtatatgacagatggtatgctcctacgggagattatggtagacaggaacctctctggt
tactctgtgatcatgcttgatgaggcacatgagaggaccatctatacggacatcctcttt
ggcctgctaaagaagctgattaggcggagagatgatctcaagttgattgtcacttccgct
actcttgatgcagagaaattctctggatatttcttcgactgcaatattttcacgattcct
ggaaggacgtttcctgtggagatactgtatgcaaaacagccacagagcgattacatggat
tctgcattgcgcactgtgttggagatccatatgagtgaacctgaaggcgacatcctcttg
ttcttgactggccaggaagagattgaccatgcctgtagctatcttcacgagaagatgcag
gcgctgggtaaggatgcacccgatttgctaatctatgcagcgtacggtgctcttccaagt
gaaatgcagtcaaagatctttgaacctactcctcctgggaagaggaaggtggttgtggca
accaacatcgcagaggcatctattacaattgatgggatatactatgttgttgacccaggc
tttgcaaaagttaacgtgtataacccgaaacgaggactggattcactggttatcactccg
atctcgcaggcatcagctaagcaaagagcagggcgtgctgggcgtacaggcccaggcaag
tgttatcgtctgtacacagaatgcgcgtatcgtaatgaaatgcccccaacatcaactccg
gaaattcagaggataaacttggggtggacagttcttaatatgaaggcaatggggatcaat
gaactaggggcatttgacttcatggaccctccagcacctcaagcacttatctctgctatg
gaacagttgtacagccttggtgccttagatgaagaaggtctgcttactaaactagggaaa
aagatggccgagtttccacaagaaccaccactttcgaaaatgctcctggctagtgtggac
ctcggatgcagtgatgaaatagtgactatcattgcaatgattcaaactgggaatgtgttc
tatcgtccgagggaaaaacaaactcaggcagatcggaaaaggggtaactttttccagccg
gaaggggatcacatcactttactgaccgtgtatcaggcgtggaaggcaaagcaattttca
ggaccatggtgcgttgagaattttcttcagatatcatcactgaggagagcacaggatgtg
aggaagcagctcctggagatcatggacaagtataggcttgatgttgtctccgctggcaat
gatctcacaaaggtaagaagagccatcaccgcaggcttcttcttcaacactgccaggaag
gattcccagggaggaggatacaggacccttgctgataaccagcaggtatatatccaccca
agcagtgcactgtttcatcagcagccacaatgggtgatttacaacgaaattgtcatgacc
tcgaaagagtacatgagggaggtcacagccatcagcccagcatggcttgtcgaattggca
ccgaggttctacaaatctatcgacccggcaaagatgagcaagcggaagcgccaggaaagg
ctcgagcctctgcatgacagatacaacgagcccaactcgtggcgcctcagcaagcgacat
ggatga
DBGET
integrated database retrieval system
