Lolium rigidum (rigid ryegrass): 124692513
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Entry
124692513 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124692513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124692513
03036 Chromosome and associated proteins [BR:
lrd03036
]
124692513
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124692513
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124692513
mRNA degradation factors
5'-3' decay
Decapping complex
124692513
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124692513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
CMS1
Motif
Other DBs
NCBI-GeneID:
124692513
NCBI-ProteinID:
XP_047081860
LinkDB
All DBs
Position
2:161269248..161277233
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AA seq
513 aa
AA seq
DB search
MDPRARYPPGTGNGRGGNPNYYARGPPLSQQNHHQQQQTPAAHQQQYVQRQPQQQHQNHH
HHQQQQQHQQQQQQQQWMRRNQIAASEAGAPGTSGPKAVAPSPTAVGNDSSSQDWKAQLK
LPPADTRFRTEDVTATKGNEFEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDIL
ARAKNGTGKTAAFCIPALEKIDQDKNTIQVVIVVPTRELALQTSQVCKELGKHLKIQVMV
TTGGTSLRDDIVRLHQPVHLLVGTPGRILDLTKKGVCILKDCSMLVMDEADKLLSPEFQP
SIEQLIRYLPASRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEE
RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFH
DFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKSSETYLHRVGRSGRFGHLGLAVNLI
TYEDRFNLYRIEQELGTEIKPIPPQIDQAIYCQ
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgcgccaggtaccctcccggaaccggcaatggtcgcggcggaaaccctaac
tactacgctcgcggcccgccgctctcgcagcagaaccaccaccagcagcagcagacgccg
gcggcgcaccagcagcagtacgtgcagcgccagccgcagcagcaacaccaaaatcaccac
caccaccaacagcagcagcaacatcagcaacagcagcagcagcagcagtggatgcggcga
aaccagatcgccgcgagcgaagcgggcgcgcccgggaccagcgggccgaaggctgtggcg
ccatccccgacggcggtcggcaacgattctagttcgcaagattggaaggcccaactgaag
cttccacccgcagatacacgattcaggacggaggatgttactgccaccaaaggaaatgag
ttcgaagactattttctcaagcgtgaactcttgatgggaatatatgagaaaggatttgaa
aaaccctctcctatccaagaagaaagcattcctattgcattaactggaagtgatattctt
gctagagcaaaaaatggaactggcaagactgctgcattctgtattcctgcacttgaaaag
attgatcaagacaaaaacactattcaagttgttatagttgttcccacacgggaattggct
ctacagacatcacaagtttgtaaagagcttggcaagcacctgaagatccaagttatggtc
accactggtggaactagcctgagggatgatattgttcgtctacatcaacctgtccattta
cttgttggaacgcctgggcgtattttggatcttacgaagaaaggtgtttgcattttaaag
gactgctcaatgcttgttatggacgaggccgacaagcttctctctcctgaatttcaacct
tccatagagcagttaatccgttaccttcctgcaagtcgacagattttaatgttttcagca
acattccctgtgactgtcaaggagttcaaggacaaatatctgcctaaaccttatgtcatt
aacctcatggatgaacttacactgaagggaattacacagttttatgcttttgtagaagaa
agacagaaagttcattgtcttaacaccctattctccaagcttcaaataaatcagtcaata
atattctgcaactctgtgaatcgtgttgagttattagccaaaaagataacggagcttggc
tactcctgcttctacatccatgcaaaaatgctgcaggaccaccgtaacagagttttccat
gacttccgtaatggggcatgcaggaaccttgtatgtacagatcttttcacaagggggata
gatattcaagctgttaatgttgttatcaattttgatttccccaagagctctgaaacatat
ctccacagggtcggtagatctggaagatttggtcaccttggtttggctgtgaatttgatc
acctacgaggaccggtttaacttgtataggattgagcaggagcttgggactgagataaag
ccaattccccctcagatagaccaggccatatattgccaatga
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