Lolium rigidum (rigid ryegrass): 124692842
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Entry
124692842 CDS
T09103
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124692842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lrd04121
]
124692842
Enzymes [BR:
lrd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124692842
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
124692842
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
FAIM1
zf-RING_4
DUF7567
PHD_2
Motif
Other DBs
NCBI-GeneID:
124692842
NCBI-ProteinID:
XP_047082240
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All DBs
Position
2:complement(201706017..201709630)
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AA seq
340 aa
AA seq
DB search
MEMDSIECVSFSHGLDDDDGDDEAVSRLPRPLLKPSAAAASAAVNLVVVSAGGAGGGGGA
VAGPLITPSTSVHELLECPVCTNSMYPPIHQCQNGHTICSTCKTRVHNRCPTCRQELGDI
RCLALEKVAESLELPCKYFSLGCPEIFPYYSKLKHESQCNLRPYNCPYAGSECSVVGDIP
FLVTHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGM
APVYMAFLRFMGDENDARSYTYSLEVGGNGRKMIWEGNPRSIRDSHRKVRDSHDGLVIQR
NMALFFSGGERKELKLRVTGRIWREQQNSDTGACIPNLFS
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggagatggacagcatcgagtgcgtgtccttctcccacggcctggacgacgacgacggc
gacgacgaggccgtgtcccgcctcccccgccccctcctcaagccatccgccgccgccgcc
tccgccgcggtgaacctggtcgtcgtttctgccggcggcgcgggcgggggaggaggggcg
gtcgcgggcccgctcataacgccgtccaccagcgtgcacgagctgctcgagtgccctgtc
tgcaccaactccatgtacccgcccatccaccagtgccaaaacggtcatactatttgttca
acctgcaaaacccgggtgcacaatcgctgcccgacatgtcgacaagagctcggcgacatc
aggtgtttggcattggaaaaagtcgctgaatcacttgagttaccttgcaaatacttctcg
cttggttgcccagagatcttcccgtactacagcaaactgaagcatgaatcacagtgcaat
ttgaggccatacaactgtccttatgcaggatctgaatgttctgttgttggggacattcct
ttccttgtcacacatctcagagatgatcataaagttgacatgcattcagggtgcacattc
aatcaccgctatgttaaatcaaaccccagagaggtcgaaaatgcaacttggatgttgact
gtcttccactgtttcggtcagtacttttgcttgcactttgaggcctttcaacttggaatg
gcaccagtatacatggctttcctccgatttatgggcgacgaaaatgatgcaaggagctac
acttatagccttgaggttggaggaaatggccggaagatgatttgggagggcaatccccgc
agcatccgcgacagccataggaaggttagggacagccatgatggccttgttatccagcgg
aacatggctctgttcttctcaggtggagaaaggaaagagctgaaactgcgggtcactggc
cgcatctggagggaacagcagaattctgacacgggtgcctgcatcccaaatcttttcagc
tga
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