Lolium rigidum (rigid ryegrass): 124693086
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Entry
124693086 CDS
T09103
Name
(RefSeq) ATP-dependent RNA helicase DEAH13
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lrd03009
]
124693086
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124693086
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
90S particles
Helicases
124693086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DHX37_C
DEAD
AAA_22
ATPase
nSTAND3
HA2_N
PhoH
AAA_19
DDHD
AAA_23
Motif
Other DBs
NCBI-GeneID:
124693086
NCBI-ProteinID:
XP_047082494
LinkDB
All DBs
Position
2:230030227..230035866
Genome browser
AA seq
1322 aa
AA seq
DB search
MCLTFLLICFGCSSSMEEDSNALILPCKRKNKAQGSSMEGDSNALILPCKRKNNAQGKGK
DGKKNKGKEDPKMSKTQLKKLHKLVEEKQKKALQAKSIETLQEHRIADDVYSLLHTTGSI
GQADTMKEKRRRAVQFSKAGLDVPEELSLFKKNCDRKGVPEDSEAVLEASPVKFIKAAKH
DYPGSERKDHENDSVKPMMGFGVSILEQKTEGTKNDAGISVHQSIPEQKTETNDDADILA
HHTVQSSVPNCSAAEIDLQDEEPQQSEASVQECFNLPIVVPVSRPPEVEKARRDLPIIMM
EQEIMEAIYENSVVILCGETGCGKTTQVPQFLYEAGFGTSNRADRKGMIGITQPRRVAVL
ATSKRVSYELGLKLGKEVGFQVRHDKQVGSKCSIKFMTDGILLREVQGDILLKKYSVIIL
DEAHERSLNTDILIGMLSRIINLRKDTIAAQQKAIRSGMNIKPEDMISPLKVVLMSATLQ
LKDFISNRRLFDVIPPAVEVPARQFPVTVHFTKKTHDDYLSQAYKKVLSIHKNLPPGGIL
VFVTGQREVDYLCKKLQRASKRQIGKKPERVGDEYGSRTEIDEKEIFEAYDIDRTEPEHQ
DGMFSSYGEDEMDDGLNVDSSDAETESEMETDSDDEDSIAHETAEDGPVLSSLKGAVSSS
VLKASFKAISGISGEPETAEELSNATNAEKSNPSIPFSKCTDPKSVSRARLHVLPLYAML
PASQQLRVFHDIPEGERLVVVATNVAETSLTIPGITYVVDTGKEKVKNYDHATGMASYEV
QWISKASASQRAGRAGRTGPGHCYRLYSGAAYGKDDLFPEFSEPEIKKMPVEGIVLMLKF
MTINKVVNFPFPTPPNKESLVEAECCLKTLEALDSEGIPTSMGKAMAQYPMSPRHSRLLL
TIIKILKSQQGCTRSNLILGYATAAASALSYVNPFLIQGDTSRESNQDGSDPEHKDQNER
KRQKKLKAMVQEARKDFSIPSSDALTIAHALRSFECSRNPVEFCRDYSLHLKTMEEMSKL
RKQLLRLIFHHSKSCDEFAWNFGGPGDVEQAWRSETDKKPMLNEEELLGQGICAGWADRV
AKKINTFSGLSKEDRKVRAARYQSCILDDTIYLHRASSVTQIPPEYVVYSELLNTKRSYM
HGVTSVKPGWLLKYASSLCTFSAPLEDPKPYYEPKSDQVYCYVSPIFSRHNWQLPLHSLP
IKDPTSRLQIFAWALLKGDVLPCLRVVQKFLSLSPSAVLGPASQRRVGDLLSRMKNGEKL
IDSRAALRHKWSTDPDFLYPEIHAWIQGKYQSQFDAIWEQMHQEVRLEGHELFPKRFKKV
KA
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgtgcctgacgtttctgctcatttgcttcggttgcagttcgagcatggaggaggatagc
aacgcgctgattttgccctgcaagaggaagaacaaggcgcaaggttcgagcatggagggg
gatagcaacgccctgattttgccctgcaagaggaagaacaacgcgcaagggaaaggcaag
gatggcaagaaaaacaagggcaaggaggaccctaagatgagcaagactcagctaaagaag
ctgcacaaattggtggaagaaaagcaaaagaaggcactgcaagcaaagagcatcgaaact
ttgcaggagcacaggattgctgatgatgtatattcactgctgcacactacgggatctatt
ggtcaagccgatactatgaaagaaaaacgtaggcgtgctgtgcagttctccaaggctggt
ttagatgtacctgaagaactttcgctatttaagaaaaactgtgatcggaaaggtgttcct
gaagacagcgaagctgtgctagaagcttccccagtgaagtttattaaggcagcaaaacat
gattatcctggcagtgaacgaaaggatcatgagaatgattcagtgaaacctatgatgggt
tttggcgtgagcattctggaacaaaaaactgaagggactaaaaatgatgctggcatttcg
gtacatcagagcattccggaacaaaaaactgagactaatgatgatgctgacattttggca
catcatacagttcagtcatctgtgccaaattgctctgccgcagagatagatttgcaggat
gaagagccacaacaaagtgaagcttctgtacaggagtgcttcaatcttccaattgtggtg
cctgtgtcaagaccacctgaggttgagaaggcgaggagggatctcccaataataatgatg
gagcaggaaataatggaagctatctacgaaaattctgtggtaattctgtgtggagaaaca
ggctgtggtaaaactactcaggtccctcagttcttatacgaagccggctttggcacaagc
aatcgagctgatagaaaagggatgattggtatcacccaaccacggcgtgttgctgttctt
gccacatccaagcgggtgtcttatgagttaggacttaagctaggaaaggaggttggtttt
caagttaggcatgataaacaggttggaagtaaatgttccatcaagtttatgacagatggt
attttgctgcgagaggttcagggtgacattctgttgaaaaaatattcggtgatcatcttg
gacgaggcacatgaaaggagtttgaacacagatatacttatcgggatgctttctagaatt
ataaatcttcgcaaggatacgattgcagctcaacagaaagcaatacgctctgggatgaac
attaagccagaagatatgattagtccgctgaaagtggtgctgatgagtgctaccttgcaa
ttaaaggattttatttcaaacagaagattgtttgatgtgattccacccgctgtagaggta
cctgcacgacaatttccagtaacagttcacttcacaaagaagacacatgacgattatttg
tcacaagcttataaaaaggttctgtcaatccacaagaatctaccaccaggtggaatcctt
gtatttgttactggacaacgagaagtggattatttatgtaaaaaactgcaaagagcatcc
aagcggcaaattggtaagaagcctgaacgggttggagatgagtatggttcaagaacagaa
atagatgagaaggaaatttttgaagcatatgatattgatagaactgaacctgagcaccaa
gacggcatgttttcctcatatggtgaagatgaaatggatgatgggctaaacgtcgattct
tctgatgctgaaacagagagtgagatggagactgacagtgatgatgaggattccattgca
catgaaactgcagaagatggaccagtgttatcatctttgaaaggtgctgtgagttcatct
gtactgaaggcgtcctttaaagctatatcaggaatatcaggagaaccggaaactgctgag
gaattgagcaatgcgacaaatgcggagaagtcaaatccttctattcctttcagtaaatgt
acagatcctaaatctgtttcacgtgctaggcttcatgttttaccactgtatgcaatgcta
ccagcttcgcagcagcttagagtgtttcacgatatccccgaaggagaaagattagttgtt
gtggcaactaatgttgcagaaacctctttaacgattcctggtataacatatgtggttgat
actggaaaagaaaaggttaagaactatgatcatgccacggggatggcaagttatgaagtc
cagtggataagcaaggcatcagcatcccaacgtgctgggagagctggaagaactgggcct
ggccactgttaccgtctctactcaggtgcagcatatggtaaagatgatttatttcctgag
ttctctgagccagagatcaagaaaatgccagttgaaggcattgtgcttatgctcaagttt
atgacaataaataaggttgtaaactttcctttccctacgcctcctaacaaggaaagtttg
gttgaagctgagtgttgcttgaagacattagaagcacttgacagcgaaggaatacctaca
tcaatgggaaaggctatggcgcaataccccatgagcccacggcattcccgtcttcttctg
acaataattaaaattttgaagagtcagcaaggctgtactagatctaacttaatattggga
tacgcaactgctgctgcatcagctttgagttatgtgaatccttttctcattcagggagac
actagtagagaatcaaaccaggatggctctgatccagaacataaggatcagaatgaaaga
aagagacagaagaagctcaaggccatggttcaagaggcacggaaggatttttccatccct
agtagtgatgctttaaccattgctcatgctttgcggtcatttgagtgttcaaggaaccca
gtggaattctgcagagattactccctacacctcaaaacaatggaagagatgtcgaaattg
agaaagcagcttcttcgattaatattccaccatagcaaatcttgtgatgaatttgcttgg
aatttcggaggtcctggggatgttgaacaggcctggaggagtgaaaccgacaaaaaacca
atgctgaatgaagaggaacttctggggcaaggaatatgtgctgggtgggccgatagggtt
gcaaagaagattaacactttctctggattgtcaaaagaggatcgaaaggttcgagctgca
cgttatcaatcttgcatcctcgatgatacaatatatctccaccgagcatcttctgttacc
caaattccaccagagtatgtagtttactctgagctactaaatacaaagagatcatacatg
catggcgtgaccagtgtaaagccaggatggctgttgaaatatgccagttctctctgcacc
ttctcagcaccactggaggatccaaaaccctactacgagcctaagagtgaccaggtctac
tgctatgttagtcccatcttttctcgacataattggcagcttccactgcacagtttaccc
atcaaagaccccaccagtcggttgcagatatttgcatgggctttgctgaaaggggatgtc
ttgccgtgtctaagggtggttcagaagttcctgtctctgtcgccatctgctgtccttggg
cctgccagccaaagaagagttggagatcttcttagcaggatgaagaatggtgaaaaatta
atagacagccgggcagcattgagacataaatggagtaccgatccagattttctttatcct
gagattcatgcatggatacagggaaagtatcagagccagtttgacgcaatatgggaacaa
atgcaccaggaagttcggctcgagggacatgaacttttcccaaagaggttcaagaaagtt
aaggcgtag
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