Lolium rigidum (rigid ryegrass): 124693213
Help
Entry
124693213 CDS
T09103
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04120
Ubiquitin mediated proteolysis
lrd04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124693213
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
124693213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lrd04121
]
124693213
Enzymes [BR:
lrd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124693213
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124693213
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
124693213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
EIF3I
Beta-prop_HPS5
zf-C3HC4_2
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
zf-C3HC4
WD40_like
WD40_RFWD3
Beta-prop_WDR75_1st
zf-C3HC4_3
zf-C3HC4_4
zf-RING_2
Beta-prop_DCAF12
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_IFT140_1st
zf-RING_UBOX
U-box
zf-RING_5
zf-RING_10
zf-rbx1
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
124693213
NCBI-ProteinID:
XP_047082633
LinkDB
All DBs
Position
2:245434235..245440805
Genome browser
AA seq
700 aa
AA seq
DB search
MGDSSVAAGALVPAGPKPDPAPSTGGDAPQVQPQAQQHPSSPAEDDAGAASASSPEEGDG
EEGVGEAEAAPDRELLCPICMALIKDAFLTACGHSFCYMCIVTHLTHKSDCPCCSNYLTK
AQLYPNFLLDKVLKKMSARQVAKTASPIDQLRHVVQQGNDMSVKELDSLMTLIAEKKRQM
EQQESETNMQILLVFLHCLRKQKLDELNEIQTDLQYIKDDISSVERHRLDLYRTKERYSM
KLRMLLDEPAASKMWPSPMDRPSSPFLPNSRAPLNASSPGGLNNRKHDLRAQVSQQGYQR
RDALVCPDPPNPPIQSGNVIARKRRVQAQFNELQEYYLQRRRTGGQSRRQDDIVAMNREG
YHEGLEDFQSVLTTFTRYSRLRVIAELRHGDLFHTANIVSSIEFDRDDELFATAGVSKRI
KVFEFSTVVNEPSDVHCPVVEMATRSKLSCLSWNKYSKNIIASSDYEGIVTVWDVQTRQS
VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTKQEASAINIDMKANICSVKYNP
GSSYFVAVGSADHHIHYFDLRNPSAPLHVFGGHKKAVSYVKFLSNNELASASTDSTLRLW
DVKDNCPVRTFRGHKNEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPASSHRFVSSDL
DEAEDDPGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAP
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgggcgactcctcggtggcggccggcgcgctggtgccggcggggcccaagccggacccg
gcgccgtccaccggcggggacgccccccaggtccaaccccaggcgcagcagcacccgtcg
tcgccggcggaggacgacgcgggggcggcgtcggcgtcgtcgccggaggagggggacggg
gaggagggggtgggcgaggccgaggccgcgcccgacagggagctgctgtgcccgatctgc
atggcgctcatcaaggacgccttcctcaccgcctgcggccacagcttctgctacatgtgc
atcgtcacgcacctcacgcacaagagcgactgcccatgctgcagcaactacctcaccaag
gcgcagctataccccaacttcctgctcgacaaggttttgaagaaaatgtcggcccggcaa
gttgcaaaaacagcatctcccattgatcaacttcgacatgttgtgcaacagggaaacgat
atgtcggttaaagagctagacagcctcatgactttgattgctgagaagaagaggcaaatg
gaacaacaagagtcagagacaaatatgcaaatattgctagtgttcttgcactgccttaga
aagcaaaagctggatgagttgaatgagattcaaactgatctgcagtacatcaaagatgat
ataagcagtgtggagagacatagattagatttgtatcgaacaaaagaaaggtactccatg
aagctgcgcatgcttttggatgaacctgctgcatcaaagatgtggccctcgcctatggac
agacctagcagtccctttctccccaattcccgggcaccacttaatgcatcatctccaggg
ggtttaaataataggaaacatgatttgagagctcaagtaagccagcaaggatatcaaaga
agagatgcccttgtttgcccagaccctcctaatccccctatacagtcgggtaacgtaatt
gctcggaagaggcgagttcaagcacagttcaatgagcttcaagaatactatctgcaaaga
cggcgtaccggaggacagtcacgcaggcaggatgacattgttgcaatgaatagagaaggt
tatcatgaaggtcttgaagatttccagtctgtgctaacaacattcactcgatacagtcgc
ttacgtgtaatagcagaactgagacatggagatcttttccacactgcaaacattgtatcc
agtatcgaatttgatcgtgatgatgagctattcgctactgctggagtgtcgaagcgtatt
aaagtcttcgaattttctacagttgttaacgagccatcagatgttcactgtccagttgtt
gaaatggctaccagatctaaactcagctgccttagctggaacaagtactcaaaaaatatt
atagcaagcagtgattatgagggcatagttactgtttgggatgttcaaacccgccagagt
gtgatggagtacgaagagcatgagaaaagagcatggagtgttgatttttcgcgtacagag
ccctcaatgctcgtatctgggagtgatgattgcaaggtcaaagtgtggtgcacaaaacag
gaagcaagtgccattaacattgatatgaaggcaaatatttgctccgttaaatataatcct
ggatcgagctactttgtcgccgtcggatctgctgatcaccatattcattatttcgatttg
cgaaatccaagtgcgcctctccatgtttttggtgggcataagaaagccgtttcgtatgtg
aagttcttatctaacaatgagcttgcatctgcatcgaccgatagcacgttacggttatgg
gatgtcaaggacaattgcccagtaaggacgttcagagggcacaaaaatgagaagaacttc
gttgggctatcggtaaataacgagtatattgcatgtgggagtgaaacaaatgaggttttt
gtttaccacaaggcaatctcaaaacctgcttccagccataggtttgtatcctccgacctg
gacgaagctgaagatgatcctgggtcttatttcattagcgctgtctgctggaagagcgat
agccctactatgctaactgccaacagtcaggggaccattaaagttctcgtgcttgctcct
tga
DBGET
integrated database retrieval system
