Lolium rigidum (rigid ryegrass): 124693231
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Entry
124693231 CDS
T09103
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04120
Ubiquitin mediated proteolysis
lrd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124693231
04120 Ubiquitin mediated proteolysis
124693231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lrd04121
]
124693231
Enzymes [BR:
lrd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124693231
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
U-box type E3
124693231
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
MAD
PI_PP_I
Motif
Other DBs
NCBI-GeneID:
124693231
NCBI-ProteinID:
XP_047082657
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Position
2:248169394..248171883
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AA seq
822 aa
AA seq
DB search
MGELYERLRQRVDKVSALGDFQRPLRVLRRLVGIPTCAKALVQHPKWIPKNQTMLIGEGR
AMELSSLLGAFFHVSAIPDHEFASKPDVGQQCFSSLRPADLMSSFSTIKSVMNCLQDGLT
DVLLVLLKNLETRDKVLEYLAEVINKNVGRSGMQVDPLKCASSGMFVNLSAVMLRLCEPF
LDQMESKKDKIDVKYLFCNDRINFKDLTAISASSEQVSSWTESWSHAHAQDDPCDGVACS
GKISSSERGSKKQNFSFICECFFMTARVLNMGLMKALADFKHLSQDLATYEDDLESNKTL
REQSVSSPQLEQDIERLEKMVAALSQENYCYEAQILTDGDFLQRALSFHRLMILWSADLV
GGFKMPLPSQCPKEFSCIPEHFLDDAMDLLALTSGVDKALEGFPLDDFLNFNIMFMASSS
YIKNPYLKAKMVEVLNCWMPQRSGLTSTASLFEGHQLCLDYLVINLLKLYVDIEFTGSHT
QFFDKFNIRHNIAELLEYLWDVPSHRHAWRQIAKQEEKGVYLNFLNFLINDSIYLLDESL
NRILELKDIETEMANIVAWNSRPAKEREERLRVFHQSENVVRFDMKLANEGVGMLAFTSE
QIPAPLLLPEMVERVASMLNYFLLQLAGPQRKSLTVKDPKKYEFKPKQLLTKIATIYVHI
ARGDKEDIFPAAISKDGRSYNEELFASAGNILWKIGVDPQIIQEFTQLAGKAKTAASEAM
DAEAILGDIPDEFLDPIQYTLMEDPVILPSSRVTIDRPVIVRHLLSDSTDPFNRSHLTQD
MLLPDTDLKLRIQEFVRCQQFRARSAADSEMGEPDGAADMVE
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagttgtacgagcgtctcaggcagagagttgacaaggtgtcagcgctcggcgac
ttccagcggccactccgtgtgctcaggcggctggtcggaatccctacctgcgccaaggct
ctagtgcaacaccccaagtggattccaaagaatcaaactatgctcattggggaaggaaga
gccatggagctctccagcttgctcggagccttcttccacgtgagcgcgatccccgaccat
gagttcgcaagcaagcccgatgtcggccaacagtgcttctcctcactccggccagctgac
ttaatgtcatctttctctactatcaagagtgttatgaattgcttgcaggacggactaacg
gatgttcttttggtgctgcttaaaaatctggagactcgagacaaggtccttgagtaccta
gcagaggtgatcaacaaaaatgtgggaagatccggcatgcaggtggaccctttgaaatgc
gctagctcgggtatgtttgtcaatcttagcgctgtgatgctccgtctatgcgagcctttc
ttggatcaaatggagtctaagaaggacaagatcgatgtcaagtatctgttctgcaacgac
agaatcaatttcaaagatttgaccgcgatcagtgcctcttcagaacaagtgtcttcatgg
acagagagctggagccatgcacatgctcaagatgatccctgtgatggagtggcttgctca
ggcaaaattagtagttcagagagaggctcgaaaaaacagaatttctcgtttatttgtgaa
tgtttcttcatgacagcaagggtgctcaatatggggttgatgaaagctctagcagacttc
aaacacctctctcaggatctcgcaacatatgaagatgatttggaatcaaacaaaacattg
agagaacaatccgtaagttcaccacaacttgagcaagatatagaacgcttggagaagatg
gtcgcggctttatcacaagagaattactgctatgaagctcagatactaacagacggtgat
tttcttcagcgtgcactatctttccacagattaatgatattgtggtcagcagatcttgtt
ggcggatttaagatgcctttgccatcacaatgccccaaggagttttcttgcattccggag
cattttcttgatgatgccatggatttacttgccctaacctctggagttgataaagctttg
gaaggcttcccattggatgacttcctcaatttcaacatcatgttcatggccagttcttct
tacattaaaaatccttatctgaaagcaaagatggttgaagttttgaattgctggatgcca
caaagaagcgggttgacatccacagcctcgttatttgaggggcaccaactatgccttgat
tatctagtaataaaccttctaaagctttatgtggacattgagtttactggctctcataca
cagttctttgacaaatttaatattcgacacaatattgctgagcttctggaatatttatgg
gatgttcctagtcatcgacatgcttggagacaaatagctaaacaagaggagaagggcgtg
tacttgaattttctgaacttccttatcaacgatagcatctatcttctcgatgagagcttg
aacagaattcttgaactcaaggacatagagactgaaatggctaacattgttgcgtggaat
agcagacccgctaaagaaagggaggagcgtttgcgtgtatttcatcagtcagagaatgtt
gttcgttttgatatgaagctggcaaatgagggtgttgggatgcttgccttcacgtcagaa
caaattccagcgccgttgcttcttcctgaaatggtggaaagggtggcaagcatgttaaat
tacttcctcttgcaacttgctggtccacaaaggaaatcgttgaccgtaaaagatcccaag
aagtatgagttcaagccgaagcagttgttgacaaagattgctaccatctatgttcacatc
gcaaggggtgataaggaagatatctttcctgctgcaatctcgaaagatggacgatcatac
aatgaggagctgtttgctagtgcaggtaatattttgtggaagatcggggtagatccacag
atcatacaggagtttacgcaactcgccggtaaggcaaaaactgctgcctctgaggccatg
gatgctgaagcaatccttggggacataccagatgaatttctggatccaattcagtatact
ctcatggaagatcctgtgatattaccatcgtcgagggtcacaatcgatcgtccagttatt
gtccggcatttgctaagtgatagtaccgatccgttcaaccgttcccatctcacacaagac
atgcttttaccagacacagatctcaagttacgcatccaagagtttgtcaggtgtcagcag
ttcagggcacgatcggctgccgactccgagatgggggaacctgatggtgctgctgatatg
gtcgaatga
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