Lolium rigidum (rigid ryegrass): 124693282
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Entry
124693282 CDS
T09103
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03030
DNA replication
lrd03420
Nucleotide excision repair
lrd03430
Mismatch repair
lrd03440
Homologous recombination
lrd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124693282
03420 Nucleotide excision repair
124693282
03430 Mismatch repair
124693282
03440 Homologous recombination
124693282
03460 Fanconi anemia pathway
124693282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124693282
03032 DNA replication proteins [BR:
lrd03032
]
124693282
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124693282
Transcription factors [BR:
lrd03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124693282
DNA replication proteins [BR:
lrd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124693282
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124693282
MMR (mismatch excision repair)
124693282
DSBR (double strand breaks repair)
HR (homologous recombination)
124693282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
124693282
NCBI-ProteinID:
XP_047082714
LinkDB
All DBs
Position
2:complement(254391365..254394753)
Genome browser
AA seq
653 aa
AA seq
DB search
MAAVRLTPNGVPAGLDGDLNLRPILQVVNLRCVNVDGGPGAARADRWRGLVSDGNETCPA
MFAAQLSGLTRSGVIRRGTVVQLDEYVVNVVGGRRVFVVLNMTVLVAECDIIGNPVITET
EFSTQTPQRVEQSNGTRQYGSMAGNPSPIRSNGNVPVFQPSMSENSLNTPTRLGNKPPAF
QPTAQPSYRPAPSYKNHGAIAKNEAPARIIPISSLNPYQGRWAIKGRVTAKGDIRRYHNA
KGEGKVFSFDLLDSDGGEIRVACFNALLDRFYEVVEVGKVYVVSRGNLKPAQKNFNHLNS
EWEIMLENGSTVELCPDEDRSIPSQRFDFRPISEIEDTPTTNMVDIIGVVTSVSTCTTLQ
KKNGTETQKRNINLKDMSGRSVDVTMWGDFCNREGSKLQEMVERGVFPVLAVKTGRVTDF
NGKSVGTISSSQLLIDPDISEAHTLRQWFDAGGRDASTQSISRDVAPAASRNVVRMTVAQ
IKDEGLGMQDKPDWVTVKASIIFFKSDSFCYTACPTKEGDRQCNKKVTKGTSGLWCCDRC
DKEFPECDYRYLLQLQIQDHSGTAWVTAFQEAAQELLGCSAGDLNRYKEEEDPRFAETMV
SCLFQDYLLRLKVKEETYGDERRVKNTLVKVERFDPAGESKYLLDSISRSVGY
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtgaggctgaccccgaacggcgtgccggcggggctggacggggacctgaac
ctccggccgatcctgcaggtcgtcaacctgcgctgcgtcaacgtcgacggcggccccggc
gcggcccgggccgacaggtggcgcggcctcgtctccgacggcaacgagacctgccccgcc
atgttcgccgcgcagctcagcggcctcacgcgctccggcgtcatccgccgcggcaccgtc
gtgcagctcgacgagtacgtcgtcaacgtcgtcgggggcagaagggtcttcgtcgttctg
aatatgacagttcttgtcgcggagtgcgacatcattgggaatccagtgattacagaaact
gaattttctacgcaaaccccccaaagagtggagcaatctaatggaacacgtcaatatggt
tccatggcaggaaacccgagtccaataaggtccaatggcaatgttccagtcttccaacct
tcaatgtcagagaactctttgaacacacccaccaggctcggcaacaaacctccggccttc
caaccaactgcgcagccatcctatcgtcctgcacccagttacaaaaatcacggagcaatt
gcaaaaaatgaagcccctgctagaataatccccatatcctcattaaatccttatcaggga
cgctgggctatcaagggtagggttactgctaagggagacatccgccggtaccataatgca
aaaggtgaaggaaaagtgttcagctttgacctacttgattctgatggtggtgagatacgg
gtggcgtgtttcaacgctcttcttgatcgcttctatgaagttgtggaagttggtaaggtc
tatgtggtatcaagagggaacttgaaacctgcacagaagaactttaaccatctgaacagt
gagtgggagattatgttggagaatggatcaacagttgagctttgtcctgatgaggatagg
tcaattccctctcagcgatttgacttcagaccgatcagtgaaattgaagatactccaacc
actaatatggttgatatcataggtgttgttacgtctgtcagcacttgcaccacattacag
aagaaaaatggcacggaaactcagaaaagaaatataaacctgaaggatatgtctggtcga
agtgttgatgtaaccatgtggggtgacttttgcaacagagaaggctcaaagctgcaagaa
atggttgaacgtggggtcttccctgtgctggctgtcaaaacaggaagagtgactgatttc
aatggcaagtctgtcggcacaatttcttcctctcaactcctcatagaccccgatatctct
gaagctcatactctaaggcagtggtttgacgctggaggaagggatgcttctactcagtcc
atatccagggatgtcgctcctgcagcatcaaggaatgtggtccggatgacagtagctcaa
atcaaggatgaaggtcttggaatgcaggacaagcctgattgggtcacagtgaaggcctcc
attatattcttcaagagcgacagcttctgctacacagcttgccctaccaaggaaggtgac
aggcaatgcaacaagaaagtgacaaaggggacctctggcttgtggtgctgtgacagatgc
gacaaggagtttccagagtgcgactacaggtatcttctgcagctacagattcaagatcac
tcgggaacagcttgggtgacggcttttcaagaggctgcgcaggagttactaggttgctcg
gcgggagatctcaataggtacaaagaggaggaggatcctcgcttcgcagagaccatggtc
agctgtctgttccaggattatctgctcaggctgaaagtcaaagaagaaacatatggtgac
gagcggagagtgaagaacaccttggtcaaagtggagaggtttgatcctgcaggtgaaagt
aaatatctgctggattcgatttcaaggtcagtgggttattaa
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