Lolium rigidum (rigid ryegrass): 124693624
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Entry
124693624 CDS
T09103
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124693624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124693624
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124693624
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124693624
Complex C
U5 SnRNP specific factors
124693624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_25
AAA_11
Motif
Other DBs
NCBI-GeneID:
124693624
NCBI-ProteinID:
XP_047083062
LinkDB
All DBs
Position
2:289921749..289929865
Genome browser
AA seq
2182 aa
AA seq
DB search
MANLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPETLWGRIDKKTFGDRAV
QAKPPELEERLTRSRKKKERDSASAPGAADGDADNLPRKRRRRSAAAREESVLSLADDVV
YKPQTKETRAAYEAMLSVIQQQFGGQPMDVLGGAADEVLTILKNDKIKNPDKKKEIDKLL
NPIPTQMFEQFVSIGKLITDFHDASDPASAPSGDGVDATMDDDIGVAVEFEEDDDDEESD
FDQVQDELDEDDDDVAELNRPGGMQMGGELDDDDMQNSNEGLNVNVQDIDAYWLQRKITQ
AYADIDPQQSQKLAEEILKIIAEGDDRDVENRLVMELDYEKFDLIKLVLRNRFKIVWCTR
LARAEDQEERKKIEEEMMGNPSLVPILEQLHATRASAKERQKNLEKSIRDEAKRLLNNDS
AGADGPRERRAVDRDMESGWLKGQRQLLDLDNLSFHQGGLLMANKKCELPDGSFRTPHKG
YEEVHVPALKPRPYGTNEKIVKISDIPAWAQPAFAGMQQLNRVQSKVYDTALFKPDNILL
CAPTGAGKTNVAVLTILHQIGLHMKDGEFDNTKYKIVYVAPMKALVAEVVGNLSKRLQDF
GLTVRELSGDQNLTKQQIDETQVIVTTPEKWDIVTRKSGDRTYTQMVKLLIIDEIHLLHD
NRGPVLESIVSRTVRQIETTKEHIRLVGLSATLPNYEDVAVFLRVRSEGLFHFDNSYRPC
PLAQQYIGITVRKPLQRFQLMNEICYEKVMAAAGKHQVLIFVHSRKETAKTARAIRDTAL
ANDTLTRFLKDESASQEILGSQAELVKSSDLKDLLPYGFAIHHAGMGRVDREMVEELFAD
KHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDT
HGEGIILTGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTIQNARXACSWLGYT
YLYIRMLRNPTLYGLPADIMETDKTLDERRADLVHSAANLLDKNNLVKYDRKTGYFQVTD
LGRIASYYYISHGTISTYNEYLKPTMGDIELCRLFSLSEEFKYVSVRQDEKMELAKLLDR
VPIPVKESLEEPSAKINVLLQAYISRLKLEGLSLGSDMVYIRQSAGRLLRALFEIVLKRG
WAQLAEKALNLCKMIDKQMWSVQTPLRQFPGIPKEILMKLEKKELAWERYYDLSSQEIGE
LIRFPKMGKQLHRCIHQLPKLNLSAHVQPITRTVLGFELTITPDFQWDDKVHGYVEAFWV
IVEDNDGEYILHHEYFMLKKQYVDEDHTLHFTVPIYEPLPPQYFIRVVSDKWLGSQTILP
VCFRHLILPEKYAPPTELLDLQPLPVTALRNARYEGLYSAFKHFNPIQTQVFTVLYNSDD
SVLVAAPTGSGKTICAEFAILRNHQKAVSGETNMRVVYIAPIEALAKERFRDWSKKFGEF
ARVVELTGETAADLKLLDKGEIIISTPEKWDALSRRWKQRKHIQQVSLFIVDELHLIGSE
KGHVLEVVVSRMRRISSHIGSNIRIVALSASLGNAKDLGEWIGATSHGLFNFPPAVRPVP
LEIHIQGVDIANFEARMQAMAKPTYTAITQHAKSGKPALVFVPTRKHARLTALDLCAYSS
AEAGGTPFLLGSTDEMDTFIGGVNEETLQNTLRCGVGYLHEGLSDLDQELVTQLFLGGRI
QVCVASSTMCWGRSLPAHLVVVMGTQYYDGRESAHTDYPITDLLQMMGHASRPLQDSSGK
CVILCHAPRKEYYKKFLFEAFPVESHLHHFLHDHMNAEVVVGVVENKQDAVDYLTWTFMY
RRLNKNPNYYNLQGVSHRHLSDHLSELIETVLNDLESSKCVSVEEDMYLKPLNLGLIAAY
YYISYTTIERFSSMLTQKTKMKGLLEILASASEYAELPTRPGEEEYIERLVRHQRFSIDK
PKYGDPHVKANALLQSHFARHTVVGNLAADQREILLSAHRLLQAMVDVISSSGWLTLALN
AMELSQMVTQGMWDRDSVLLQLPHFTKDLARRCMENKEKPIESIFDLAEMSADEMRDLLQ
LSNSQLQDIGEFFKRFPNVDMAYEVREGDDIRAGDNVTLQVTLERDMSNLPSSEVGPVHA
PRFPKPKEEGWWLVVGDASGSTKQLLAIKRVALQKRARVKLEFTAAAEPGRKDYMIYLMS
DSYLGCDQEYEFTVDVKDAGAD
NT seq
6549 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctcggagggggcgcggaggcgcacgcgcggttcaagcagtacgagtaccgc
gcgaactcgagcctggtgctcaccaccgactcgcgcccgcgggacacgcacgagcccacg
ggcgagcccgagacgctctggggcaggatcgacaagaagaccttcggggaccgcgccgtg
caggccaagccccccgagctcgaggagcggctcaccaggtcgcgcaagaagaaggagcgc
gactccgcctccgccccaggcgccgcggacggcgacgctgacaacctgccccgcaagcgc
aggcgccgctccgccgccgcccgcgaggagagcgtgctctctctcgcggacgacgtcgtc
tacaagccccagaccaaggagacccgcgccgcctacgaggccatgctcagcgtcatccag
cagcagtttgggggccagcccatggacgtgctcggcggggctgccgacgaggtgctcacc
atcctcaagaacgacaagatcaagaaccccgacaagaagaaggagatcgacaagctcctc
aaccccatccccacccagatgtttgagcagttcgtctccatcgggaagctcatcacggat
ttccatgatgccagtgatcctgcctccgcgccctctggtgacggtgttgacgcgaccatg
gacgatgacattggagttgctgtcgagttcgaagaggatgacgacgacgaggaaagtgat
tttgatcaggtgcaagacgagttggatgaggatgatgatgacgtcgctgagttgaaccgt
cctggaggcatgcaaatggggggtgagttggatgacgatgatatgcagaactccaatgag
gggctcaacgtaaacgtgcaagacattgatgcttactggcttcagagaaagataacgcaa
gcatatgctgatatcgacccccagcagagccagaagcttgccgaggagatcttgaagata
atcgcagagggtgatgacagggatgtcgagaatcgccttgtcatggagttggactatgag
aaattcgatctcattaagctcgtactacgcaaccgcttcaagatagtctggtgtacccgc
ctggcaagagctgaagatcaggaggagcgcaagaagatagaggaagagatgatgggtaac
ccaagcttagttccgatattggagcagctacatgcaaccagagcctctgcaaaggagagg
cagaagaatctggagaagagcatcagggatgaggcaaagaggcttctaaacaatgacagt
gctggtgctgatggtcctagggagcgtcgggcagttgaccgggatatggagagtggctgg
ttgaagggccagagacagttgcttgatcttgacaacctctctttccaccaaggtggtctc
ctgatggccaacaagaaatgtgaacttcctgatggatcgtttagaacccctcataagggg
tatgaggaagtgcatgtgccagcattgaaacctaggccatatggaactaacgagaagatt
gtgaagatatctgatatcccagcgtgggctcaaccggcttttgctggcatgcaacaacta
aacagggttcagagcaaggtttatgatactgccctcttcaaaccagataacatccttctc
tgcgctccaactggtgctggtaaaacaaatgtggctgtgcttacaatccttcaccaaatt
ggtctgcatatgaaggatggtgagttcgacaataccaagtacaaaatcgtctatgtggcc
ccaatgaaagctttagttgccgaagttgttggaaatttgtccaagcggctgcaagatttc
ggtcttactgttagggagctcagtggagaccagaacctgacgaaacaacagattgatgaa
acacaggtcattgttacaacacctgagaaatgggatattgtcacgaggaaatcgggtgac
cgaacctatactcaaatggtaaagcttctgatcattgatgagatccatctacttcatgat
aacagagggccagtcctggagagtattgtttctagaacagttcggcagattgagacaacc
aaggaacatatacgcttagttggtctctctgcaaccctccctaactatgaagatgttgct
gtattcttgcgtgtacgctctgaaggtctcttccattttgataacagttacagaccttgt
cctcttgcgcagcagtacattgggatcactgtaaggaagccactgcagaggtttcagttg
atgaatgagatttgttatgagaaagtaatggctgctgctggtaagcatcaagtgcttata
tttgtgcactctaggaaggagacagcgaaaactgctcgtgccatcagagatactgccttg
gctaatgacacgttgactcgctttctgaaggacgagagtgcaagccaggagatccttggc
agtcaggcagagcttgtcaaaagcagtgatcttaaagaccttctgccgtatgggtttgct
attcatcatgctgggatgggaagggtagaccgtgaaatggttgaagaactctttgctgat
aagcatatacaggtccttgtttcgacagctacccttgcatggggtgtcaacttgcctgct
cacactgttattataaagggtactcagatttataatccggaaaaaggtgcttggacagaa
ttaagtcctctggatgtcatgcagatgcttggtcgtgcaggtagacctcagtatgacaca
catggagagggaataatcttgactggccacagtgaattgcaatactacctctcccttatg
aaccaacagctgcctattgagagtcagttcatatccaaattggcagatcaattaaatgca
gagatcgttttgggaactattcagaatgctcggtaagcatgctcgtggcttggctacact
tacctctacatacggatgcttcggaatccaacactgtatggtttaccagcagatatcatg
gagaccgacaaaacactagatgaaaggagagctgacttggtacactctgctgcaaatttg
ttggataagaataatttggtgaagtatgacaggaaaacaggatactttcaggttactgac
cttggaaggattgccagttattactatattagtcatgggactatttcgacatataatgag
tatctgaagcccacaatgggtgatattgagctgtgtcgcctgttctccctgagtgaagag
ttcaagtatgttagtgtcaggcaagatgagaaaatggagctggcaaaacttttggatcgt
gtgccaattcctgtaaaagagagtctggaggagcccagtgcaaagattaatgttctgctg
caagcatatatatctaggctgaaattggagggcctctcccttggttctgatatggtctac
atcagacagagtgctggccgcctcttacgagcactatttgagatagttttgaagagagga
tgggctcaattagcggagaaggctctcaatctttgtaagatgattgataagcagatgtgg
agtgtccaaacacccttgcgccagtttcctggtattccaaaggaaatcctgatgaaactg
gagaaaaaagaattggcttgggagaggtactatgacctatcatcacaggaaatcggtgag
ctaattcgtttcccaaagatggggaagcagctgcacaggtgcatccaccagctaccaaag
ttgaacctgtctgcccatgttcaacctattactcgcacagttttgggttttgaattgact
ataacacctgatttccagtgggatgataaggtacatggatatgttgaggccttttgggtt
atagttgaggacaatgatggcgagtacattcttcaccatgagtacttcatgcttaagaag
cagtatgtggatgaagatcacacacttcactttacagtgccgatatatgagccattgcct
cctcagtattttatacgtgtcgtgtctgacaagtggcttggttcacagacaattcttcct
gtctgttttaggcacttgattcttccagaaaaatatgctcctccaactgaattgcttgat
ctgcaaccactacctgttactgcattgaggaatgcacgatatgaaggtctttatagtgct
tttaaacatttcaaccccatccagactcaagtgttcactgtcctgtataacagtgacgac
agcgtgttggttgctgcgccaacaggcagtggcaagacaatatgcgcagaatttgctata
ctaaggaaccatcagaaggcagtatctggggaaactaacatgcgggttgtgtatatagct
cctattgaggctcttgcgaaagaaagattcagggactggtcaaagaaatttggagaattt
gcccgtgtagtggagctaactggtgaaactgcagctgatttgaagcttcttgacaaaggg
gagatcattattagtactcctgagaagtgggatgcactttctcgacgttggaagcagcga
aagcacatccaacaagtcagcttatttattgttgacgagcttcatctaattggatctgaa
aaggggcatgtcctggaagtcgttgtttctcggatgaggcgtatttcaagccatattggc
agtaacattcggattgtggcgctttcagcatcacttggaaatgctaaagatcttggagaa
tggatcggcgccacctctcatggtcttttcaacttccctccagcagtgcggccagttcca
ttagaaatacacattcagggtgtggatatagcaaatttcgaggcaagaatgcaagccatg
gcaaagcctacatacactgctatcacacaacatgcaaagagtggtaagcctgccctggtg
tttgtaccgacacgtaagcatgcacggttgactgcattggacctgtgcgcatactcaagt
gctgaggctggtggaacgccattccttcttgggtcgacagatgagatggatacttttatt
ggaggtgtcaatgaagaaacacttcaaaatacactgagatgcggtgtgggatacttgcat
gagggccttagtgaccttgaccaggaacttgtaacccagctcttccttggtgggaggatc
caagtgtgtgttgcgagtagcacaatgtgctgggggagatcgttgcctgctcatctagtt
gttgtgatgggaacccaatattatgatggcagggagagtgctcataccgattatccaatc
actgatctgctacagatgatgggtcacgctagcaggcctcttcaggatagctcggggaag
tgtgttatattgtgccatgcacctcggaaggaatactacaagaagttcctctttgaggcc
ttccctgtggagagtcatcttcaccatttcttgcatgaccatatgaatgctgaggttgtt
gtcggcgttgtagaaaacaagcaagatgccgtggactatcttacctggactttcatgtac
cggcggctgaacaagaaccctaactactacaatctgcagggtgtaagtcacaggcatctg
tcagatcatctttctgagctaatcgagacagtgttgaatgacctagaatcaagcaagtgt
gtatctgtagaggaggatatgtacctgaagccgctcaaccttggtctcattgctgcatac
tactacattagctacacgactattgaacggttcagttcgatgctcactcagaagacgaag
atgaaaggcctcctggaaattctagcttctgcatcagagtacgcagagcttccaactcgc
ccaggtgaagaagaatacattgagaggctagttcgtcaccagagattttctattgacaag
cccaagtatggtgatccacatgtgaaggccaacgctctactgcaatcccactttgcaagg
cacacggtggtagggaacctggcagctgaccagcgggagatcctcctttctgcccataga
ctgctccaggcaatggttgatgttatctccagcagtggatggctcactcttgctctgaat
gcaatggagttgagtcagatggttacccaaggcatgtgggatcgtgactctgtgctgctc
cagcttccacacttcaccaaggaccttgcccggagatgcatggaaaataaagagaagccc
atcgagagcatctttgatctggctgagatgagtgctgatgagatgcgggatctgctgcag
ctatcaaactctcagctgcaggacatcggtgaattcttcaaacggttccccaacgtcgac
atggcttatgaggtccgcgagggcgacgacatcagggctggtgacaacgtaactttgcag
gtcactctggagcgcgacatgtcgaacctgccatcttctgaggttggcccggtccatgcc
ccgagattcccgaagcccaaggaggaaggctggtggctggtggtcggcgacgcctctggc
tccaccaagcagctgctggcgattaagagggtcgccctccagaagagggcacgtgtgaag
cttgagttcaccgctgccgcggagccagggaggaaggactacatgatctacctgatgtcc
gactcctacctgggctgcgaccaggagtacgagttcaccgttgacgtgaaggatgctgga
gcagattga
DBGET
integrated database retrieval system
