Lolium rigidum (rigid ryegrass): 124694641
Help
Entry
124694641 CDS
T09103
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124694641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124694641
03009 Ribosome biogenesis [BR:
lrd03009
]
124694641
04131 Membrane trafficking [BR:
lrd04131
]
124694641
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrd04147
]
124694641
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124694641
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
124694641
Membrane trafficking [BR:
lrd04131
]
SNARE
SNARE associated proteins
Others
124694641
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124694641
Exosome [BR:
lrd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124694641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_5
AAA_33
AAA_14
AAA_22
CDC48_2
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
Parvo_NS1
ABC_tran
AAA_18
ATPase_2
IstB_IS21
AAA_7
Viral_helicase1
NB-ARC
AAA_24
TsaE
Zeta_toxin
Vps4_C
NACHT
ResIII
DUF815
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
124694641
NCBI-ProteinID:
XP_047083563
LinkDB
All DBs
Position
3:35007564..35009912
Genome browser
AA seq
782 aa
AA seq
DB search
MASTSSSKKAANRLVVEESTMDENSVCNLHPATMDRLSIFHGDIVLLKGKRRHTTVCVVH
PDDTCEEHKLKINKVARSNLRVRIADVVSVHLCPDAKYGKRVHVLPVDDTIEGITGNLFE
AYLKPYFVDAYRPVHKGDLFLVRGGMRSVEFKVIDIDPAVNYCIVAGDTEIFCDGEPVKR
EDEERLDDIGYDDVGGMGKQMNQIRELVELPLRHPQIFKSLGVKPPKGILLYGPPGSGKT
LIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK
REKTHGEVERRIVSQLLTLMDGMKARAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP
DEVGRLEVLRIHTKNMKLSEDVNLEVVAKDTHGYVGADLAALCTEAALQCIREKMDVIDL
EDDTIDAEILNSMAVTNDHLKTALVGTNPSALRETVVEVPNVSWSDVGGLDGVKRELQET
VQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF
GESEANVREIFDKARQSAPCVLFFDELDSIAMQRGGSVGDAGGAADRVLNQLLTEMDGMN
AKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRHQIFKACLRKSPVAKDVDL
GALARFTTGFSGADITEICQRACKYAIREDIEKDIERQRSGMEVDGGQEDEVAEIKAAHF
EESMKYARRSVSDSDIRKYQSFAQTLQQSRGFGTDFRFPAQPQASVNAFDTTVAPDEDDL
YN
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcacgtcgtcttcgaagaaggcggcgaaccggctggtggtggaggagtccacc
atggacgaaaactccgtctgcaatctccacccggccaccatggaccgcctctccatattc
cacggcgacatcgtgctgctcaagggcaagcgccgccacaccaccgtctgcgtggttcac
cccgatgacacctgcgaggagcacaagctcaagatcaacaaggtggcccgctccaacctc
agggttcgcatcgccgacgtcgtgtccgtgcacctctgccccgacgccaagtacggcaag
cgcgtgcacgtcctccccgtcgacgacaccatcgagggcatcacgggcaatctattcgag
gcctacctcaagccctactttgtggacgcctaccgcccggtgcacaagggcgacctcttc
ctcgtgcgcggtggcatgcggagcgtcgagttcaaggtcatcgatatcgaccctgcggtc
aactactgcattgtggcgggggacacggagatcttctgcgacggcgagcccgtgaagagg
gaggacgaggaaaggctcgacgacatcggctatgacgacgtcggcggcatgggcaaacag
atgaaccaaatcagggagctggtcgagctgccgcttaggcatccgcagattttcaagtct
ctcggcgtgaagcctcccaagggcatcctcttgtatggacctcccggctccggcaagaca
ttgatcgctcgtgcggtggccaacgagacgggagcgttcttcttctgcatcaacggcccc
gagatcatgtccaagatggccggtgagagcgagagcaacttgaggaaggcgtttgaggag
gccgagaagaacgcgccgtcgatcatcttcatcgatgagatcgactccattgctcccaag
agggagaagacacacggcgaggtggagaggcgcatcgtgtcccagctgctaacgctcatg
gacgggatgaaggcgcgagcgcacgtcatcgtcatgggcgccacgaaccgccccaacagt
atcgaccctgctctgaggcgcttcggaaggttcgaccgcgagatcgacattggcgtgccg
gacgaggtcgggcgccttgaggttctgcgcatccacaccaaaaatatgaagctctcggag
gacgtcaacctggaagtggtggccaaggacacgcacggctatgttggtgccgacttggcc
gcactctgcaccgaggctgcgctccagtgcatcagggagaagatggatgtgattgacctt
gaggacgacacaatcgacgccgagatcctgaactccatggccgtcaccaacgaccacctg
aagactgctctcgtcggcaccaatccttcggcgcttcgtgagaccgtcgttgaggtgccc
aatgtcagctggagcgatgttggcggcctcgacggcgtcaagagggagcttcaagagacc
gtgcagtacccggtggagcatcccgagaagtttgagaagtttggcatgtcgccttccaag
ggcgtcctcttctacgggccaccgggctgcggcaagacacttctggccaaagcgatcgcc
aacgagtgtcaagccaacttcatcagcatcaaggggcccgagctgctcaccatgtggttc
ggcgagagcgaggccaacgtccgtgagatcttcgacaaggcgaggcagtcggcgccgtgc
gttcttttcttcgatgagctcgactcgatcgcgatgcagcgcggcgggagcgtgggagac
gcaggcggtgcagcggacagggtcctgaaccagctgctgacggagatggacggcatgaac
gccaagaagacggtgttcatcatcggcgccaccaacaggccagacatcatcgactcggca
cttctccgtcccggtcgcctcgatcaactcatctacatccccttgccggacgaggcctcg
cgacaccagatcttcaaggcttgcctcaggaagtctcccgtggccaaggacgtcgacctc
ggcgcgctcgcgaggttcacgacaggtttcagtggcgccgacatcaccgagatttgccaa
agggcgtgcaagtatgccattagggaagacattgagaaggacatcgagaggcagaggtca
ggcatggaggtggacggcgggcaggaagatgaagtggctgagatcaaggcggctcacttc
gaggagtcgatgaagtatgcgaggaggagtgtgagcgacagcgacattagaaagtaccaa
tcgttcgctcagacgctgcagcagtccaggggcttcggcaccgacttccgcttcccggcg
cagccacaagcttctgtcaacgccttcgacacaaccgtggcacctgatgaggatgatctg
tacaactga
DBGET
integrated database retrieval system
