Lolium rigidum (rigid ryegrass): 124695211
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Entry
124695211 CDS
T09103
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124695211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124695211
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
124695211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
DUF1258
Motif
Other DBs
NCBI-GeneID:
124695211
NCBI-ProteinID:
XP_047084045
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All DBs
Position
3:complement(95565874..95571436)
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AA seq
926 aa
AA seq
DB search
MAPGTASLVLKPACDACGKASDLYGTACRHATVCSSCGKAMAQARTRCAVCAAPVTNLIR
EYNVRVDTTAEKAVWIGKFATSLPPFSEKKIAGNHWSLRKDGPEGRQLTATMREKYYSRK
PWILEDGTGEHRYQSQLEASQSATPTYYLLMMHGKEFHAVPVGSWYNFSKIAQYKQLTLE
EAEEKMKRRRSSTTGYGPWMMKLATHGPGAFGSEFKNLDEANDKVRSKKENTNKDGYHPD
KGEEDEEARAPRRNAHGLSTKGVDDDEEEDEIEDFDFDAEIEIGDDWEHEEAFSDDDENP
YVDPEVRPDLSDTENPAPQEIKQDDDEDEQGVGGLSKSGKELIKLLRRADGQSESDDDDQ
EDTNQEDESPSPVLAPKLKDECKCEPQENNPAKLTTTGLAIYTPDAPSSNRKRGSVGDDS
KTSNGAALKKPKIEPESKTLGIKEQPVLNIFPLDGFDTNTSTVTEEEITRVLIAFAPVAM
QDFVSRFRPRLRTPEDKKHFSEIVTKITRVGKTNGSSYIYLREAFATAGSDTNTSTVTEE
EIRRVLFAIAPVAPQDFASRFNLRLRTPEDRQHFSEIVKKIAKVDKIKGSSYICRREAFA
SAGSDTNTSTVTEEEIRRVLIETAPVAIHDFVSRFRPRLRTPEDDDEDEQGVGSLSKSGK
ELKKLLRPADGQSESDDDDQEDTDQEDESPSPVLAPKLKDECKCEPQENNPAKLTATGLA
ICTPHVPSSNQKRRSGGDDSKTSNSPALKKPKKELETKALGVKEEPLSSLQPISKAFASA
GSVTNTSTVTEEEVRRVLIATAPVAIHDFASRFRPRLRTPEDKQHFFKIVKKFAKLDKTK
GISYICLREAFALAGSDTNKSTITEEEIMRVLIAIAPVAPRDLVSRFRPRFRTPEEKQHF
TEILKKIAKVDRTKGSSYICLREEYR
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggcccccggcaccgctagcctggtgctgaagccggcgtgcgacgcctgcggcaaggcc
tccgacctctacggcacggcctgccgccacgccaccgtctgcagctcctgcggcaaggcc
atggcgcaagcccgcacgcgctgcgccgtctgcgccgcccccgtcaccaacctcatccgg
gagtacaatgtgcgggtggataccaccgcggagaaggccgtctggataggcaagttcgcc
accagtttaccgcccttctcggagaagaagattgcggggaaccactggtctcttcgtaag
gatggccccgaaggacgacagcttactgccactatgcgggagaaatactacagcagaaag
ccatggatattggaagatggaacaggggaacatcggtaccaaagccaactcgaggcatca
cagtctgctacccctacatattatttgctgatgatgcacggcaaggagttccatgctgtt
cctgttggttcctggtataacttcagtaaaatcgcacaatacaaacagctgactttggaa
gaagctgaagagaagatgaaaagaaggagaagcagcacaactgggtatggaccatggatg
atgaagttggctacacatggacctggtgcctttggttccgagttcaaaaaccttgatgaa
gcaaatgacaaggtccgatccaagaaagaaaatacgaacaaggatgggtatcaccctgac
aaaggggaggaggacgaagaagccagagctccaaggagaaatgcccatgggctttctact
aagggcgtggatgatgatgaggaggaagatgagatagaagactttgattttgatgctgaa
attgagataggtgatgattgggagcatgaagaggccttcagtgatgatgatgagaatcct
tatgttgacccagaggtaagacctgatttatctgatactgaaaaccctgctccacaagaa
attaagcaggatgatgacgaggatgaacaaggagtgggtggcctgagcaagtccggtaag
gaacttataaaacttctccgtcgtgctgatggacaaagtgaatctgatgacgatgaccaa
gaagacactaatcaggaagatgagtcgccatctccagtacttgctccaaaactgaaagat
gaatgcaaatgtgaaccacaggaaaacaaccctgctaaactaacaacaactggacttgct
atttacactccagatgcacctagctccaatcggaaaaggggatcagtgggtgatgattca
aaaacatctaatggtgcagcgctgaagaagccaaagattgaacctgaatctaagacattg
ggtatcaaggagcagcctgttttaaacatatttcctctagatggatttgacacaaacaca
tctacagtaacagaggaggaaatcacaagagtacttattgcgtttgctcctgtggcaatg
caagattttgtctccagatttaggcctagactcagaactccagaggacaagaaacatttt
tctgaaatcgtgacgaaaataacaagagtgggtaagaccaatggcagcagctacatttac
cttcgagaggcatttgctacagcaggaagtgacacaaacacatctacagtaacagaggag
gaaatcaggagagtactttttgcgattgctcctgtggcaccgcaagattttgcctccaga
tttaatctcagactcagaactccagaggacaggcaacatttttctgaaattgtgaagaaa
attgccaaagtggataagatcaaaggcagcagttatatttgccgtcgagaggcatttgct
tcggcaggaagtgacactaacacatccacagtaacagaggaggaaatcaggagagtactt
attgagactgctcctgtggcaatacatgattttgtctccagatttaggcctagactcaga
actccagaggatgatgatgaggatgaacaaggagtgggtagcctgagcaagtccggtaag
gaactaaaaaagctgctccgtcctgcggatggacaaagtgaatccgatgacgatgaccaa
gaagatactgatcaggaagatgagtcaccatctccagtacttgctccaaaactgaaagat
gaatgcaaatgtgaaccacaggaaaacaaccctgctaaactaacagcaactggacttgct
atttgcactccacatgtacctagctccaatcagaaaagaagatcagggggtgatgattca
aaaacatctaatagcccagcgctgaagaagccaaagaaagaacttgaaacaaaggcattg
ggtgtcaaggaggagccactctcttcattgcaacctatttcaaaagcatttgcttcagca
ggaagtgtgaccaacacatctacagtaacagaggaggaagtcaggagagtacttattgcg
actgctcctgtggcaatacatgattttgcctccagatttaggcctagactcagaactcca
gaggacaagcaacatttttttaaaattgtgaagaaatttgccaaactggataagaccaaa
ggcatcagttacatttgccttcgagaggcatttgctttggcaggaagtgacactaacaaa
tctacaataacagaggaggaaatcatgagagtacttattgcgattgctcctgtggcaccg
cgagatcttgtctccagatttaggcctagattcagaactccagaggagaagcaacatttt
actgaaattttgaagaaaattgccaaagtggataggaccaaaggcagcagttacatttgc
cttcgagaggagtacagataa
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