Lolium rigidum (rigid ryegrass): 124695466
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Entry
124695466 CDS
T09103
Name
(RefSeq) transcription factor bHLH140-like
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124695466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124695466
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
124695466
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
124695466
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
124695466
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
124695466
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
124695466
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DcpS_C
AAA_33
HIT
Macro
zf-C2HE
AAA_18
AAA
nSTAND3
AAA_16
AAA_5
AAA_25
Zeta_toxin
CPT
KTI12
AAA_22
AAA_29
NACHT
ABC_tran
NB-ARC
AAA_24
RNA_helicase
AAA_28
AAA_30
Motif
Other DBs
NCBI-GeneID:
124695466
NCBI-ProteinID:
XP_047084264
LinkDB
All DBs
Position
3:complement(123723073..123726483)
Genome browser
AA seq
787 aa
AA seq
DB search
MDPDGGATTASPSASAAAPGAGAEMKEGVGKQVMVILVGPPGSGKSTFAEAVLNAASGRP
WTRVCQDTIGKGKTGTKIQCLKAAADALKEGRSVFIDRCNLEREQRADFVKLGCTVQADV
HAVFLDLPAKVCISRSVSRTNHEGNVQGGMAAMVVNRMLKKKETPSLTEGFSRIMVCQDD
DDIKKAVDTYSALGPSDSLSSGLFGQKSKVPVQAGIMRFLKKVDTSSAEKSSGAMLSSSG
RKPGQQDTSPKQVNPEAVGTSSMEVENKSNNMKGNEEKSKESASSDISSLTLAFPSISTA
DFQFDLERASEIIVDTASEFVQKHDNGRLVLVDLSQKSRILSLVKDRAAKKNIDSRRFST
FVGDITQLKSKGGLHCNVIANAANWRLKAGGGGVNAAIFNAAGEDLQRATKECADTLRPG
SSVAVALPSTSHLHQQEGVTHVIHVLGPNMNPMRPDCLKNDYTKGCKILHDAYTSLFENF
ASIVQSHTVKQNDETSSKKSASGVISPNDSKMKRQDSHDSERAKKYKLLPPILTSRQNHE
HKGTNTGNYHDKSMGSSDAPNQAREEDSKKNGAVSNKTWGNWAQALHEVAMHPEKYKNSD
SILETSDEVVVLKDLYPKAKKHVLVISRRDGLDSLADVKKEHLSLLRSMHSVGVKWAQKF
LEEDASLIFRLGYHSVPSMRQLHLHVISQDFNSPSLKNKKHWNSFTSAFFLDSVDVMEEI
DQQGSATISPDEKLLAMELRCHRCRSAHPNIPKLKSHIAACKSSFPSHLLKKDKLLSSDS
TLGMDCA
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggaccccgacggaggcgccaccaccgcctctccatctgcttccgcggcagccccaggc
gcgggcgcggagatgaaggagggcgtcggcaagcaggtgatggtgatcctcgtcggtccc
ccggggagcggcaagtccacgttcgccgaggccgtcctaaacgccgccagcggccgcccg
tggacccgcgtctgtcaggacacaattggaaagggcaaaactgggaccaaaatacagtgc
ttgaaggccgcagcagacgctctgaaggagggaaggagtgttttcattgaccggtgcaac
ttggaacgtgagcagcgcgctgatttcgtgaagcttggttgtaccgtacaagcggatgtg
cacgctgttttcttggatctccctgccaaggtttgcatctcgcgctcagttagccgaacg
aaccatgaagggaatgtgcagggcgggatggctgccatggttgtgaaccgcatgctgaag
aagaaggagacgccctcgctcactgaaggtttcagtcggatcatggtctgtcaggatgac
gatgacattaagaaggcagttgacacatatagtgctttagggccttcagatagtctttct
tcaggactatttggccagaagagcaaagtgcctgtacaagctggtataatgagatttcta
aagaaggtagatacttctagtgctgaaaaatccagtggagctatgctttcatcaagtggt
agaaagccagggcagcaagatacatcaccaaaacaggtcaaccctgaagctgttggcacc
tcttcaatggaagtagaaaacaagtcgaataacatgaagggaaatgaagaaaaaagtaaa
gaaagtgcttcttctgacatcagttcgctgactttagcatttccatcaatttctactgct
gacttccagttcgatcttgagagagcgtctgagattatagtggatacagcttctgaattt
gtgcagaagcatgataatggaagactagttcttgtggacttgagtcagaaatcaagaata
ttgtcgttggtcaaggacagggctgctaagaagaacattgactccagaagattttccaca
tttgtaggggacatcacccaattgaagtcaaaaggaggtcttcactgcaatgtgattgct
aatgccgccaactggaggttaaaagctggaggtggaggggtgaatgcagcaatatttaat
gctgctggagaagatttacagcgtgcaaccaaggaatgtgctgacacattgagacctggt
agctctgttgccgttgcacttccatctacttcccatctgcatcaacaggaaggggtgacc
catgtcatacatgttctcggaccaaatatgaacccaatgcggccagattgtctgaagaat
gactataccaaagggtgtaagattcttcacgatgcatatacttcactttttgagaacttc
gcatccattgtccagagccacacggtgaagcagaatgatgaaacttcatcaaagaagtca
gcgtccggagtgatatcacctaatgattcaaaaatgaaacgacaggacagccatgattct
gaaagggccaagaaatataagttgcttccacctattttgacttcaaggcaaaaccatgag
cacaaagggactaacactggaaattatcatgataagtccatggggtcgtctgatgctccg
aatcaagctagagaggaagacagcaagaagaatggtgcggtcagcaataagacttgggga
aactgggcacaggctcttcacgaggttgccatgcacccagaaaaatacaagaactcagat
tctatcctggagacgtctgatgaagttgttgttctaaaggacctctatccaaaggccaag
aagcatgtgctggtgatatctaggagagatggtcttgattctctagcagatgtcaagaaa
gagcacttgtctttgctgaggagtatgcattcagttggggttaagtgggcacagaagttc
ctagaggaagatgcatctctgatattcagacttggatatcattcggtcccatccatgcgg
cagttgcaccttcatgttataagtcaggatttcaactcacccagcttgaagaacaagaag
cactggaattccttcaccagcgcgttcttccttgactctgtcgatgtcatggaggagatc
gaccagcaaggatccgcaaccatcagccctgacgagaaacttcttgcaatggagctgagg
tgccacagatgcagaagtgcccacccgaacatccccaagctcaaatcccacatcgcagcc
tgtaagtcctcattcccctcccatcttctgaagaaagacaagctgttgtcgtcagattca
acactgggtatggactgcgcctaa
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