Lolium rigidum (rigid ryegrass): 124695640
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Entry
124695640 CDS
T09103
Name
(RefSeq) uncharacterized protein LOC124695640
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124695640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124695640
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
124695640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
Exportin-5
HRDC
Motif
Other DBs
NCBI-GeneID:
124695640
NCBI-ProteinID:
XP_047084420
LinkDB
All DBs
Position
3:complement(147286638..147301347)
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AA seq
1209 aa
AA seq
DB search
MFGLDTVELNMPRARRAQELQEDAEARDTWQVASSRAQVSLSGKKETETEMYMSEEVFWT
GDAFGVSGPETKSSPVGTKENLRFCTPSAPLPRPQDVYHIVVDNTNKPFKHALLDKSPDG
GASPTHPLEKLPVEQLFDRRVPQSPPLKPPELSDTPFTFIQDRKTLNKLVRKLKNATEFA
VNVEYNHFRSFQGLTCLMQISTRTEDFIVDTLKLRKYLGERLREAFQDPTKKKVMYGTTR
DIMWLQRDFGIYICNLFDIGQASRILQMGHVSLEYLLLSFCGVIAKKRCQRADWRQRPLP
DRMTKCAREVTHYLLYIYDLMRLRLMNESSGENDLLLEVCKCSNEICLQLYEKEPPTDKS
YLHIHGLKDNELSARQLAVFAGLYQWRDSVARIEDESTAYILPNKTLLEIAKQIPVTARR
FKRTVEAKNKFLDHHLGHVITIIRNAVANSDSFENIAEQLKKERLEELMVADTKSSSEDT
ETITAVDADNNESNSHSSDEPALVPGFSSEQGHVPKAPFFTLIVDGSLDCSAICGTLKKV
LKWMGFDQLTMVIMYKIIPFMKSCPEELRPKLVHEILEPVFHYLHTKLYKSWCALLHDGA
VEVPDKIADIFSSKEEANKLGSSLIIQLTHAASELLAVIACPQLYGSSEFLCSKSLVGYV
LCHDVLRLQVLSLIYYIFGAWNVDEAKMTLVPLCYKVIEVATATRHDAIISFVKDMIPHL
IQWLAFESSLEGTQPGDVIIKDLCYQAFRCVHCPNQDLSCEEKPKDRIYEVFQSWLEQTK
LVVGSRKKPMHELEEFVWIWEVEEEFSKYIPGYIDMLHQVNEMDDCLERDSSSPRVLFEK
LDPKFVSKYAIGSPSHDYLWAMSAMVKRKMSAMHWQRRNDKMFQFLCLLIDFKPYIQHSS
YDDSVVELVEESKAYPDLAEFLRADALEVFCAILFLWEPQFHPMIRKEHKDVLKKILHHV
TSLENITFLKPLLPDVRDFPVRLRPYAKNYIDNRNKEYIVAKEQARLHEQFDAHLASGVL
DHYLSKGDAGSHGDALKAVLNDSRQFSALDHDLIKLSFERRAELLGRRDQLHLFYKCFQR
VTRDAQLRIEVQSLIDQLGRQDFFCIDDDAIDWDQKCCSELVDKFNKQVFTGSDLPKYYV
IRGIMDYRAMSRMKDGSCSWCDVFQKVVGKPYDRWIQNIPSFWMDTRYYKHQYYDIIQQP
LQKIWKKEE
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggctcgacacggtagagctcaatatgccaagagctcgcagagctcaggagtta
caggaggatgcggaagcgcgggacacatggcaggttgcttccagcagagctcaggtctct
ctttccggcaagaaggagacggagacggagatgtatatgtcagaggaagtattctggaca
ggtgatgcctttggggtttctggccccgagacaaagagttcccccgtggggacaaaggaa
aacttgcgcttctgcacccccagcgctcctcttccacgaccgcaggatgtgtaccacatt
gtggtggacaacacgaacaagccattcaagcatgcattgcttgacaagagccctgatggt
ggtgccagtcccacacacccacttgaaaaactccctgtggagcaactatttgacaggcgt
gttcctcaaagcccgccgttaaaaccacctgagttgagtgacactccttttacattcatt
caagaccggaaaaccttgaacaagctggtgaggaagctgaagaacgcaactgagtttgct
gtcaatgtggaatacaaccactttaggtcttttcagggtctcacctgcctaatgcagatt
tcaactagaactgaggactttattgtggacactcttaagctccgcaaatatcttggtgag
aggttaagagaagcttttcaagatccaactaagaaaaaggtaatgtacgggaccactcgt
gatattatgtggcttcaacgtgattttgggatatatatatgcaacctttttgacatagga
caggcttcaagaatcttacagatgggccatgttagcctggagtatcttttgcttagtttc
tgcggagtgatagcaaaaaaaagatgtcagcgtgcagattggaggcagaggccacttcct
gatagaatgaccaagtgtgctagagaagttacacactatctgctgtacatatatgactta
atgcgtttgaggttgatgaatgagtcttcaggtgaaaatgatcttcttttggaggtttgc
aagtgtagcaatgaaatctgcttgcaactatacgagaaggagccaccgactgataaatca
taccttcacatacatgggctgaaagataatgaattgagcgcaaggcagcttgcagttttc
gctggcctgtatcaatggagagatagtgttgctcgtattgaggatgagagcactgcttat
atattacccaacaagactctacttgagatagcgaagcagattcctgtgaccgctaggagg
tttaaaagaactgtggaagcaaaaaataaatttcttgatcaccatctcggccatgtcatt
actatcatcagaaatgctgttgctaattctgattcttttgaaaatatagccgagcaacta
aagaaagaaaggctggaggagttaatggtggcagatacaaagagcagtagtgaagacacg
gaaacaattactgctgttgatgctgataataatgaaagtaattctcattcgagtgatgaa
cctgctttagttccaggattttcaagcgagcagggacatgtaccaaaagctcccttcttt
actcttatagttgatgggtccttagattgttcagccatatgtggcactctcaagaaggtt
ctaaagtggatgggatttgatcagctgactatggtcatcatgtataaaattattccattt
atgaaaagttgtcctgaagagcttcggccaaagttggtacatgaaatactagagccagtc
tttcactatcttcacaccaagctttataagtcatggtgtgcacttttgcacgatggtgca
gtggaagttcctgataaaattgctgacattttctcatcgaaggaagaagctaataaatta
ggatcgagtcttattattcagttgacccatgcagcatcagaattgctcgctgtaatagca
tgtccacagttatatggatcttcagagtttctttgttcaaaatctcttgtggggtatgtt
ctatgccatgatgtccttaggcttcaagtgctgagtttaatttactacatctttggagca
tggaatgttgatgaagcaaagatgacattggttccactttgttacaaagtcatagaagtt
gctactgctacacgtcatgatgccattatatcttttgttaaagatatgattcctcatcta
attcagtggttagcttttgagtcaagtttggagggcactcaacctggtgatgtgataatt
aaagatctttgttatcaggcatttcgctgtgttcattgtccaaatcaggatttatcgtgt
gaagaaaaacccaaggacaggatttacgaagtctttcaaagttggctcgaacagacaaag
ttggttgttggcagtagaaaaaaaccaatgcatgaactggaagaatttgtgtggatatgg
gaggttgaagaagaatttagtaaatatattccaggttatatcgacatgttgcatcaagtg
aatgaaatggatgactgcttggagcgcgattcttcttcaccgcgggttctctttgagaaa
ttagatcctaaatttgtatccaaatatgctattggtagcccttctcatgattacctctgg
gccatgtccgctatggtgaagcgcaaaatgtctgcgatgcattggcagagacggaatgat
aaaatgttccaatttttgtgtttactcattgattttaaaccttatattcagcactcaagt
tatgatgacagtgtagtggaacttgtggaagagtcaaaggcttatcctgatcttgctgaa
tttcttagggctgatgctcttgaggttttctgtgcaatactgtttttgtgggagcctcag
ttccatcctatgatacgtaaggaacacaaagatgtgctcaagaaaatacttcatcacgtg
acttctctggaaaacataacttttctgaagccgttgctaccagatgtaagagattttccg
gtgcgtttgcgaccttacgcaaaaaattatattgataacaggaacaaagagtatattgtc
gcgaaagaacaagcaagattgcatgaacaatttgatgcacatttggcttcaggtgtgtta
gatcattatctcagcaagggtgatgcaggttcacacggtgatgcactgaaggctgttctt
aatgatagtagacagttttcagctctggatcatgatctcattaagttgtcttttgagcga
agagctgagcttctgggcaggcgagatcaattacatttattttacaaatgttttcaacgt
gttactagggatgcacagctaagaattgaagttcaaagtttgattgatcagctgggccgt
caagactttttctgcattgacgatgatgctattgattgggaccagaaatgctgttcagaa
cttgtggacaaattcaacaagcaagtcttcactgggtctgatcttccaaaatattatgtt
attcgtggaattatggattatcgagcaatgtcacgcatgaaggatggctcatgttcatgg
tgcgatgtttttcagaaggttgttggtaaaccatatgataggtggatacaaaacattccc
tcgttttggatggacacaagatactataagcaccagtattatgacatcattcaacaacca
ttgcaaaagatatggaagaaggaagagtag
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integrated database retrieval system
