Lolium rigidum (rigid ryegrass): 124696897
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Entry
124696897 CDS
T09103
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03030
DNA replication
lrd03420
Nucleotide excision repair
lrd03430
Mismatch repair
lrd03440
Homologous recombination
lrd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124696897
03420 Nucleotide excision repair
124696897
03430 Mismatch repair
124696897
03440 Homologous recombination
124696897
03460 Fanconi anemia pathway
124696897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124696897
03032 DNA replication proteins [BR:
lrd03032
]
124696897
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124696897
Transcription factors [BR:
lrd03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124696897
DNA replication proteins [BR:
lrd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124696897
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124696897
MMR (mismatch excision repair)
124696897
DSBR (double strand breaks repair)
HR (homologous recombination)
124696897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF5651
Motif
Other DBs
NCBI-GeneID:
124696897
NCBI-ProteinID:
XP_047085513
LinkDB
All DBs
Position
3:75393147..75396149
Genome browser
AA seq
612 aa
AA seq
DB search
MDAAAAAMPVTPGAVAYVIANPAPATPDDVPETVVQVVDLKPIGSRFSFMASDGKDKIKA
ILSTHFASEVHSGRLQNLGLLRILNYACNDVPNKQDKILIITKCEVVSPALDAEIKSEVK
VEEEPAVLSKPASIVLKPRQDVKSASQIVSEQRGNAAPAARLAMTRRVHPLLSLNPYQGN
WVIKVRVTSKGNLRSYRNARGEGHVFNVELTDEDGTQIQATMFNEAAKKFYPVFELGKVY
YISKGSLRIANKQFKTVQNDYEMTLNESAVVEEAEGETFIPPVQYNFVKIDMLGPYVGGR
ELVDIIGVLQSVSPTLSIRRKIDNESIPKRDIVVADDSNKTVTVTLWNDLATTVGEELLD
MVDSAPIIAVKSLKVSDFQGVSVSTVGKSTLVINPELPEAEKLKAWYESEGKGTSMASVG
AGMGASSPGSSRSLYSDRVFLSHITSDPDLGQGKPVFFSLHAHISHIKPDQTMWYRACNT
CNKKVTEQIGSGYWCEGCQKNYDECALRYIMVIKVSDPTGEAWLSLFNDQAERIIGCSAD
ELDRIRKEEGDDRFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEAK
YQLEEISKLTAC
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgccgccgccgctatgccggtgacaccgggcgccgtggcctacgtcatagcc
aacccggcgccggccacgcccgacgacgtgccggagaccgtcgtgcaggtcgtcgacctc
aagcccatcggctcccgcttcagtttcatggctagcgacgggaaggacaagatcaaggcg
attctctccacccacttcgcctccgaggtccactccggcagactccagaacctcggcctc
cttcgcatcctcaactacgcctgcaacgacgtcccaaacaagcaggacaagatcttgatc
atcaccaagtgcgaggtcgtgtccccggcgctagacgccgagattaagagcgaggtcaag
gtagaagaggagcccgcggttctgtctaagccggcctcgattgtgttgaagccgaggcag
gacgtgaaatccgcctcccagattgttagcgagcagcgtggaaatgctgcccctgcagcg
cgcttggccatgaccaggcgggtgcatccgttgctctctctgaacccctaccagggaaac
tgggtcatcaaggttcgggtcaccagcaaaggcaacctgagatcttacaggaatgcccgt
ggggaaggccacgtcttcaatgtagagctcactgacgaggatggcacccagatccaggct
accatgttcaatgaggctgcaaaaaagttctatccagtgtttgagctggggaaggtctac
tacatctccaaaggatcactcagaattgccaacaagcagttcaagacagtccagaatgac
tacgagatgaccctaaatgagagtgctgttgttgaagaggctgagggggaaactttcatt
ccaccagtgcaatacaactttgtcaagattgatatgctagggccatatgttggtggcagg
gagctagtagatattattggtgttcttcagagtgtgtcacctactctgagtatcagaaga
aagattgacaatgagtccatcccaaagcgtgacattgttgtcgcagatgactcgaacaaa
actgttactgttactctttggaatgatcttgccaccactgttggtgaagagctcttggac
atggttgactctgcacctatcattgcagtaaagagcctgaaagtatctgactttcaaggt
gtatctgtctccactgtgggcaagagtactcttgtaattaaccctgagttgcctgaggca
gaaaagcttaaagcctggtatgagtctgaaggcaagggcacttccatggcatcagttggt
gcaggcatgggtgcatctagtcctggtagctctagatcattgtactctgacagagttttc
ctgtctcacatcacaagtgatcctgatttgggtcagggcaagcctgttttcttcagcctg
catgcccatataagccacatcaagcctgaccagaccatgtggtaccgtgcctgtaacacc
tgcaacaagaaggtgactgaacaaattggatcaggatactggtgcgaaggttgccagaag
aactatgatgagtgcgcactgaggtacatcatggtcatcaaggtctctgatcccactggt
gaggcctggctttctctcttcaatgaccaagcagagaggatcatcggctgcagtgctgat
gagcttgatcggatcaggaaagaggagggtgatgacaggttccagctcaagctgaaagag
gctacctgggttccccacctcttccgcgtgagcgtggcacagaacgagtacatgggtgag
aagaggcagaggatcactgtgaggagtgagtcgccggttgactttgctgctgaagcaaag
taccagcttgaggagatctccaagctcactgcctgctag
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