Lolium rigidum (rigid ryegrass): 124697132
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Entry
124697132 CDS
T09103
Name
(RefSeq) pre-mRNA-splicing factor syf2
KO
K12868
pre-mRNA-splicing factor SYF2
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124697132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124697132
Spliceosome [BR:
lrd03041
]
Complex B
Other components
Prp19-related factors
124697132
Complex C
124697132
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYF2
SoxA-TsdA_cyt-c
Vanabin-2
Motif
Other DBs
NCBI-GeneID:
124697132
NCBI-ProteinID:
XP_047085725
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All DBs
Position
1:complement(305315572..305317977)
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AA seq
336 aa
AA seq
DB search
MGKSDPDCVNSSNPFHECSDYCHRKIAEAKRRLLEEQESWKKPAAERTVHPDCVNASNPY
HDCSEFCFKNIANAKAALERGEQEPAAGGSGKSEVAPEQADGDDGSEQQEDAAANDGYPQ
MTEKQKKLFQLQLKMNEARKANQQAMVAEKKRMEPRGESKGVSKEKWLEERKKKIGRLLD
SNGLDMSKSYMLDTQDMAEAKYKKWEKEPAPDGWDVFNQKTLYTAYKKRTKNIEVNMDAY
NRAKETDPEFYREASSLQYGKVSKVAEPNIDRMVNELKERDEKRKSFSRRRKFNEDKDID
SINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggggaagtcggaccctgactgcgtcaactcgtcgaacccgttccacgagtgctccgac
tactgccaccgcaagatcgccgaggccaagcggcgcctcctcgaggagcaggagtcgtgg
aagaagcccgcggcggagcgcacggtgcaccccgactgcgtcaacgcctccaacccctac
catgactgctccgagttttgcttcaagaacatcgccaacgccaaagcagcgttggagcgt
ggggagcaagagccggctgccggaggctctggcaaatcggaggttgcgccggagcaggct
gacggtgatgatggttccgagcagcaggaggatgcagccgctaatgacggttacccccag
atgactgaaaagcagaagaagctctttcagctgcagcttaagatgaacgaagctaggaag
gcgaaccagcaggcgatggttgcggagaagaagaggatggagcctcgtggcgagagcaaa
ggcgtatccaaggagaagtggctggaagagaggaagaagaagatcgggaggctgctcgac
tcgaatggcctggacatgtccaagtcttacatgcttgacacacaggacatggcagaagca
aaatacaagaagtgggagaaagaacctgcgccagatggctgggatgttttcaaccagaaa
accttgtatactgcatacaagaagaggaccaagaatatagaagtcaacatggatgcatac
aatagggcgaaagaaaccgatcctgaattctaccgcgaggcttcaagtcttcaatatggc
aaggtgtctaaggtggcggaaccaaacattgaccgaatggttaatgagctcaaggagcgg
gatgagaaacggaaatcattcagcaggagacgcaagttcaatgaagacaaggacattgac
tcgatcaacgaccggaacgagcacttcaacaagaagattgagagggcctttggcaaatac
acgcttgagatcaagaacaacttggaaagagggactgccttgccagattaa
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