Lolium rigidum (rigid ryegrass): 124697347
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Entry
124697347 CDS
T09103
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03030
DNA replication
lrd03410
Base excision repair
lrd03420
Nucleotide excision repair
lrd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124697347
03410 Base excision repair
124697347
03420 Nucleotide excision repair
124697347
03430 Mismatch repair
124697347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrd03032
]
124697347
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124697347
DNA replication proteins [BR:
lrd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124697347
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124697347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
AAA_22
AAA_30
RCF1-5-like_lid
AAA_19
RuvB_N
AAA_assoc_2
nSTAND3
AAA_5
Sigma54_activ_2
PTCB-BRCT
AAA_16
AAA_18
Gp44_lid
AAA_24
AAA_14
BRCT_2
Zeta_toxin
AAA_2
NTPase_1
AAA_17
RNA_helicase
AAA_33
RsgA_GTPase
Mg_chelatase
AAA_11
TsaE
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
124697347
NCBI-ProteinID:
XP_047085911
LinkDB
All DBs
Position
1:307212186..307222953
Genome browser
AA seq
1058 aa
AA seq
DB search
MSSDIRKWFMKPHDKNAGAAKPSGTGTGAAAAKKPVLSIPEKPAPSSVSGSQDASARRKT
SKYFAPKTEKDSDVTDKSLPKRKLHKSSDLLDDDSKPLAANRVPKDEEEDDDDDFVAPSK
RKTPVKPPPSKKLKAASNDDDEDERMDEDAKTPSKAAGRGRGRGRGGRGAVHAKTATPDD
DVGGGEDRMDEDAKTPSKSTGRGRGSGRGGRGGGTAHGKTTGLDDDDAEEDRMDEDDKTP
SKAAGRGRGGRGAGSTPGGRGRGGGGRGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFV
ISGTLDSLEREEAGDVIKRYGGRVTGSISKKTNYLLADEDVGGVKSNKAKDLGVPFLTED
GLFDMIRKSKPAKAPANKHENNSNSEKLQKSQTKSSPVKVEKRAVEQVSTMDKSIASKSE
TASTNNQKAKVVDRGSLQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWEEQFLHPGQKGK
GKKQTDGGAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGG
STSNSIKELISNATLNYSDNRTKKPKAVLIMDEVDGMSAGDRGGVADLIASIKISKIPIV
CICNDRFSQKLKSLVNYCLLLNFRKPTKQQMGKRLMEIARKEGIQAQENAMEELAERVHG
DIRMALNHLQYMSLSQSVVKYDDIRLRLNSSAKDEDISPFTAVDKLFGFNGGRLRMDERM
DLSMSDPDLVPLIIQENYINYRPSAVGKDDSGVKRMNYLARAAESLADGDIVNVQIRRYR
QWQLSQAACFASSIVPAALMHGNREVLEAGERNFNRFGGWLGKYSTTNKNKRLMEDVHSH
ILASQQANVDREALRLDYLTLLLRQLTGPLKTMPKDEAVQKVVEFMDTYCLTQEDFDTLV
ELSKFKGHPNPMDGIQPAVKSALTKAYKQGSSCRVIRSADQINIPGMKKTLKKRVAAILE
PLDESLPEENGASAEGDEDEASDAENDDELAPGDSKPTLDLQSDKKKGIQVQLDLKTNGN
GSSAKKAPAKSKASGSAGKAAGGSAGKAAGGSAGKRKR
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggacatcaggaaatggttcatgaagccgcacgacaagaatgctggtgcggcc
aagccatccggcaccggtactggcgccgccgcggccaagaagcccgtgctcagcattcca
gagaagcccgcgccatcttcggtgtctggcagtcaagatgcttcagctagaaggaagaca
agcaagtacttcgcacccaaaacagaaaaagattcagatgttaccgacaagagtttgcct
aaaagaaaacttcacaaaagcagcgacctacttgacgatgacagcaagcctttggcagct
aacagagtccctaaggatgaagaagaagacgacgatgatgactttgtggcgccttccaaa
aggaaaacccctgtgaagccaccgccatcaaagaagttgaaggctgcatctaatgatgat
gacgaggatgaaaggatggatgaagatgccaagaccccttccaaagcagctggaagggga
agaggcaggggaaggggaggaagaggagcagtccatgcaaagactgctactcctgatgat
gatgttggtggtggggaggacaggatggatgaagatgctaagactccctccaaatcaact
ggaaggggaagaggaagcggaaggggtggaagaggcggaggaacagctcatggaaagact
actggtcttgatgatgatgatgctgaggaggacaggatggatgaagatgataagacccct
tccaaagcagctggaaggggaaggggaggaagaggagcaggatctactcctgggggaaga
gggagaggagggggcgggagaggtttcatgaattttggtgaaaggaaggatcctcctcac
aaaggggagaaggaagtcccagagggtgcccctgactgtttagctggtctgacatttgtc
ataagtggcactcttgacagtcttgaacgggaggaagcaggtgatgtaataaagcgttat
ggtggccgtgtgactggctctattagtaaaaagacgaattacctgttggctgatgaagac
gttggtggtgtgaaatctaacaaagcaaaagatctgggggtcccattcttgactgaagat
ggtttatttgatatgatccggaaatcaaagcctgcaaaggctcctgcaaacaaacatgaa
aataacagcaactctgaaaagctacagaaatcacagacgaagagctctccagttaaagtt
gaaaaaagagctgttgagcaagtcagtaccatggacaagagtattgcatcaaagagtgaa
actgcttccactaacaaccaaaaggccaaggttgttgaccgtggttctttgcaatggaca
gaaaaatatcggccaaaagttccgaacgacatagtaggcaaccaatcaatggttaaacaa
cttcatgattggttgaaaagttgggaggaacaattcctccatcctggccaaaagggtaaa
ggaaagaagcaaaccgatggtggagctaaaaaggctgtattgctgagtggacctccaggt
attggtaagaccacaactgcaaaagttgtcagtcagatgcttggattgcaggccattgag
gttaatgcaagtgatagccgcggtaaagcagactccaagatcgagaaaggtgttgggggg
agcacatcaaattctatcaaagagcttatcagcaatgccaccctcaattatagtgacaac
cggacaaagaagcctaaggctgtactaatcatggatgaagttgacggtatgtctgctggc
gataggggtggagttgctgatcttattgccagcatcaagatatccaagattcctatagtt
tgcatttgcaatgaccgttttagccagaaattgaagagccttgtaaattactgtttgcta
ctcaacttcaggaaaccaacaaagcaacagatgggtaagaggttgatggagattgccaga
aaagaaggtattcaagctcaagagaatgcgatggaagagcttgcagaaagagtacatgga
gatattcgcatggcactcaaccatttgcaatacatgagtctctcacagtctgtggtcaaa
tatgatgatataagattacgccttaatagtagtgccaaagatgaagatatctctccattc
acggctgtggacaagctgttcggtttcaatggtgggagactaaggatggatgagagaatg
gatttgagcatgagcgatcctgatttagttcccttgattatacaggaaaattatatcaat
tatcggcctagcgctgtggggaaggatgacagtggagttaaaagaatgaattatcttgcc
cgtgccgctgagtctctagcagacggtgatattgttaatgtacaaataagaagatatcgg
cagtggcagctgtcgcaagctgcttgttttgcttcatctatagtacctgctgctttgatg
catggaaatagagaagtccttgaagcaggtgaacggaactttaataggtttggtggatgg
ttgggcaagtactcaactaccaacaaaaacaaaagactaatggaagatgtccatagtcat
attcttgcatcgcagcaagcaaatgtggacagggaggcgttgaggctggattatctcact
cttctcttgagacaattgactggcccactgaagacaatgcctaaggatgaagctgtccaa
aaagtggtggagtttatggatacttactgtttaacccaggaagactttgacacacttgtt
gaattatccaaatttaagggtcatccaaatcctatggatggtattcaaccagctgttaaa
agtgccttgacgaaggcttacaaacaaggaagtagttgtcgtgttattcgatcagcagat
caaataaatatcccaggcatgaaaaaaacattaaagaaacgagtagcagcaatcttggag
ccattggatgagagtttgcctgaagaaaatggagcatcagctgaaggtgatgaagacgaa
gcttctgatgctgaaaatgatgatgaacttgctcctggtgactcgaagccgacactggac
ctgcagagtgataagaagaaaggaattcaagtgcagctggacctgaagaccaatggcaac
gggtcaagcgcaaagaaggcgccagcaaaatcaaaagcttcagggtctgcagggaaggct
gcgggagggtctgcagggaaggctgcgggaggctcagccgggaagagaaagaggtag
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integrated database retrieval system
