Lolium rigidum (rigid ryegrass): 124697788
Help
Entry
124697788 CDS
T09103
Name
(RefSeq) LOW QUALITY PROTEIN: polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd00040
Pentose and glucuronate interconversions
lrd01100
Metabolic pathways
Module
lrd_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
124697788
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
124697788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
124697788
NCBI-ProteinID:
XP_047086285
LinkDB
All DBs
Position
3:complement(402835709..402838061)
Genome browser
AA seq
402 aa
AA seq
DB search
MASSTSAKLVWSPLLALLLMSVCDASSVEQPWQRGARGDGKHDDTQALAKAWSAACSSSR
PVVLLVPKGKSYLTKSTTLSGPCKSTVVCTVKGTMVAPPSRSDWTENNIHWIMFQGISGL
TVTVGGTINGNGQIWWKNSCKTNEALPCTQAPTALTFHLCDNLKVDNLKIVHSQQIHMSI
EDCTDVQLTRMSITAPSTSPNTDGIHITRSKDVQVRGCIIKTGDDCMSIEDGTQNLHVTK
VVCGPGHGISIGSLGDDNSRAEVSGITIDSVQLYGTTNGARIKTWQGGSGFAKNIIFQNI
IMDNVQNPIIIDQNYCDSAKPCKDQESAVEISNIVFENIRGTTTSEDAIKLSCNKNAPCS
GITLENIELKLESGNGDTESTCQNAKWTESGNVVPSPCKGNN
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcaacgagtgctaagctcgtgtggtctcccctgctcgcgctgctcttgatg
tccgtctgcgatgctagctcagtggaacagccttggcaaaggggcgctcggggcgacggg
aagcacgacgacacgcaggccttggcaaaggcgtggagcgcggcgtgctcctcttcccgg
ccagtcgtgctgctcgttccaaagggcaagagctacctcaccaagtccaccactctttct
ggcccatgcaaatccacagtcgtctgcaccgtaaaaggcacgatggtagctcctccgagc
cggtcagactggactgaaaacaacatccactggatcatgttccaaggaatctccggtctc
actgtcaccgttggcggcacaatcaacggcaatggccagatttggtggaagaactcatgc
aagaccaatgaagctttgccatgcacacaggctcccactgctttgacatttcacctatgc
gacaatctgaaggtggacaacctgaaaattgtccacagccaacagatccatatgtcgata
gaggattgcaccgacgtgcaattaacccgcatgtctatcacggcgcccagcacaagcccg
aacaccgatggcatccacatcacgcgctccaaagatgtgcaagttagagggtgtatcatc
aagaccggagatgactgcatgtcgattgaggatggaactcagaatcttcatgtcaccaaa
gtcgtgtgtggtcccggacatggcatcagcattggaagtttgggagatgacaactctaga
gcggaggtttccggcattacaattgactcggtgcaattatatggcacgaccaacggtgcc
cgaatcaagacatggcagggcggaagtgggttcgcgaagaatatcatatttcagaacatt
atcatggacaatgttcaaaatccaattattattgaccagaactactgtgactctgctaag
ccatgcaaggatcaagaatcggcggtggagatcagcaacatcgtcttcgagaacattaga
gggactaccacttccgaggatgccatcaagttgagttgcaacaaaaatgctccgtgctct
ggcataacccttgagaacattgaattgaagttagagagtggcaatggtgacaccgaaagc
acctgccagaatgcaaaatggacagaatctggaaatgttgttccatcaccttgcaaaggc
aacaactag
DBGET
integrated database retrieval system
