Lolium rigidum (rigid ryegrass): 124698004
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Entry
124698004 CDS
T09103
Name
(RefSeq) transcription factor bHLH140-like
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124698004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124698004
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
124698004
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
124698004
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
124698004
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
124698004
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
124698004
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DcpS_C
AAA_33
HIT
Macro
zf-C2HE
AAA_18
tRNA_lig_kinase
AAA
Zeta_toxin
nSTAND3
AAA_16
AAA_25
AAA_5
AAA_29
AAA_22
cobW
NB-ARC
KTI12
NACHT
ABC_tran
AAA_30
Motif
Other DBs
NCBI-GeneID:
124698004
NCBI-ProteinID:
XP_047086483
LinkDB
All DBs
Position
3:111516678..111520189
Genome browser
AA seq
773 aa
AA seq
DB search
MDPDAGAGAEMKGGVGKQVMAILVGPPGSGKSTFAEAVLNAASGRQWARVCQDTIGKGKT
GTKIQCLKAAADALKEGKSVFIDRCNLEREQRADFVKLGSTLQSDVHAVFLDLPAKVCIS
RSVSRTNHEGNVQGGMAAMVVNRMLKKKETPLLTEGFSRIMVCQDDDDIKKAVDTYRALG
PLDSLASGVFGQKSKAPVQAGIMRFLKKVDTSSAEKSSGAMLSSSGRKPGQQGTSPKQVN
LEAVGASSMEVENKSKNMKINEGKSKESVSSDINLHTLAFPSISTADFQFDLERASEIIV
DTASEFVQKHDNGRLVLVDLSQKSRILSLVKDRAAKTNIDSGRFFTFVGDITQLKSKGGL
QCNVIANAANWRLKAGGGGVNAAIFNAAGEDLQRATKECADTLRPGSSVAVALPSSSHLH
QQEGVTHVIHVLGPNMNPMRPDCLKNDYTKGCKILHDAYTSLFENFASIVQSHTVKQNDE
TSSKKSASEVISPNDSKMKRQDSHDSERAKKYKLLPPILTSRQNHEHKGSNTQNYNDKST
GSSDALNQTREEDSKKNGAVTNKTWGSWAQALYEVAMHPEKYKNSDSILETSDEVVVLTD
LYPKAKKHVLVISRRDGLDSLADVKKEHLSLLRSMHSVGVKWAQKFLEEDASLIFRLGYH
SVPSMRQLHLHVISQDFNSPSLKNKKHWNSFTSAFFLDSVDVMEEIDQQGSATISPDEKL
LAMELRCHRCRSAHPNIPKLKSHIAACKSSFPSHLLKKDKLLSSDSTPGMDCA
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atggaccccgacgcaggcgcgggcgcggagatgaaggggggcgtcggcaagcaggtgatg
gcgatcctcgtcggccccccgggcagcggcaagtccacgttcgccgaggccgtcctaaac
gccgccagcggccgccagtgggcccgcgtctgtcaggacacaattggaaagggcaaaact
gggaccaagatacagtgcttgaaggccgcagcagacgctctgaaggagggaaagagcgtt
ttcattgaccggtgcaacttggaacgtgagcagcgtgctgattttgtgaaacttggctcc
actctacaatcggatgtgcatgctgttttcttagatctccctgcgaaggtttgcatctcg
cgctcagttagccgaacgaaccatgaagggaatgtgcagggcgggatggctgccatggtt
gtgaaccgcatgctcaagaagaaggagacgcccttgctcactgaaggtttcagtcggatc
atggtctgtcaggatgacgatgacattaagaaggcagttgacacatatagggcattaggg
cctttagatagtcttgcttcaggagtgtttggtcagaagagtaaagcgcctgtacaagct
ggtataatgagatttctaaagaaggtagatacctctagtgctgaaaaatccagtggagct
atgctttcatcaagtggtagaaagccagggcagcaaggtacatcaccaaaacaggtcaac
cttgaagctgttggcgcctcttcaatggaagtagaaaacaagtcgaagaacatgaaaata
aatgaaggaaagagtaaagaaagtgtttcttctgacatcaatttgcacactctagcattt
ccatcaatttctactgctgacttccagttcgatcttgagagagcgtctgagattatagtg
gatacagcttctgaatttgtgcagaagcatgataatggaagactagttcttgtggacttg
agtcagaaatcaagaatattgtcgttggtcaaggacagggctgctaagacgaacattgac
tctggcagatttttcacatttgtgggggacatcacccaattgaagtcaaaaggaggtctt
caatgcaacgtgattgctaatgctgccaactggaggttaaaagcaggaggtggaggggtt
aatgcagcaatatttaatgctgctggagaagatttacagcgtgcaaccaaggaatgtgct
gacacattgagacctggtagctctgttgccgttgcgcttccatctagttcccatctgcat
caacaggaaggagtgacccatgtcatacatgttcttggaccaaatatgaacccaatgcgg
ccagattgtctgaagaatgactataccaaagggtgtaagattcttcatgatgcatatact
tcactttttgagaactttgcatccatcgtccagagccacacggtgaagcagaatgatgaa
acttcatcaaagaagtcagcgtctgaagtgatatcacctaatgattcaaaaatgaagcga
caggacagccatgattctgaaagggccaagaaatataagttgcttccacctattttgaca
tcaaggcaaaaccatgagcacaaagggagtaatacacaaaattataatgataagtccact
ggatcgtctgatgctctgaatcaaactagagaggaagacagcaagaagaatggtgcggtc
accaataagacctggggatcctgggcacaggctctttacgaggttgccatgcacccagaa
aaatacaagaactcagattctatcctggagacatctgatgaagttgttgttctaacggac
ctctatccaaaggccaagaagcatgtgctggtgatatctaggagagatggtcttgattct
ctagcagatgtcaagaaagagcacctgtctttgctgaggagtatgcattcagttggggtg
aagtgggcacagaagttcctagaggaagatgcatctctgatatttagacttggatatcat
tcggttccatccatgcggcagttgcaccttcatgttataagtcaggatttcaactcaccc
agcttgaagaacaagaagcactggaattccttcaccagcgcgttcttccttgactctgtc
gatgtcatggaggagatcgaccagcaaggatccgcaaccatcagccctgacgagaaactt
cttgcaatggagctgaggtgccacagatgcagaagtgcccacccgaacatccccaagctc
aaatcccacatcgcagcctgtaagtcctcattcccctcccatcttctgaagaaggacaag
ctgttgtcgtcagattcaacaccgggtatggactgcgcttag
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