Lolium rigidum (rigid ryegrass): 124698351
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Entry
124698351 CDS
T09103
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124698351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124698351
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124698351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
PRP4
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_WDR41
WD40_RFWD3
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
eIF2A
Beta-prop_SCAP
Beta-prop_NWD2_C
Tricorn_2nd
DUF7899
Beta-prop_NUP159_NUP214
DUF6929
WD40_like
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
124698351
NCBI-ProteinID:
XP_047086792
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All DBs
Position
3:144480201..144484667
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AA seq
517 aa
AA seq
DB search
MENPRPQAPGFTPPMAPLPLPLHPPIAPIPGAPPRAPSTSAAAAAESDDDDEVDYEVSDD
HRAARERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEREMERRDRLRG
LMVRLEADGQVDRLLRAQEDDQGAAGADEDDAEQIQYPFFTEGTKELLQARVDIAHYSLP
RAKARVERAKRRLADPDEDPDAEADLVVKQAAEFVLECSEIGDDRPLTGCSFSRDASMLA
TSSWSGIIKVWSMPQITKIATLKGHTERATDVAFSPVDNILATASADKTAKLWNSDGSLL
MSFNGHLDRLARLAFHPSGKYLGTASFDKTWRLWDINTGTELLLQEGHSRSVYGVSFHPD
GSLAASCGLDAHARVWDLRSGRLYCTLIGHVKPVLGVSFSPNGHLVATASEDNFCRIWDL
RTRRMLYSIPAHKSLISHVKFEPQEGHYLATSSYDTRAALWSTRDYKPIKSLAGHESKVT
SLDISGDGQQIVTVSHDRTIKMWSCRSSIRDNEMELD
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccccaggccccaagcccccggcttcacccctcccatggctcctctccccctc
cccctccacccgcccatcgcgcccatcccgggggcccctccccgcgccccctccacctcc
gccgccgccgcggccgaaagcgacgacgatgacgaggtcgactacgaggtctccgacgac
caccgcgccgcgcgggagcgccacgagcgcgccgtgcaggagctcctgcagcggcgccgc
gcctacgccatggccgtgcccaccaacgactccgccgtgcgcgcgcgcctccgccgcctc
ggcgagcccatcacgctcttcggggagcgcgagatggagcgccgcgaccgcctgcgcggc
ctcatggtccgcctcgaggccgacggccaggtcgaccgcctcctccgcgcgcaggaggac
gaccagggagccgcgggcgccgacgaggacgacgccgagcagatccagtaccccttcttc
accgagggcaccaaggagctgctgcaggcgcgcgtcgacatcgcgcactactcgctgccc
cgcgccaaggccagggtcgagagggccaagcgccgcctggctgaccccgacgaggacccc
gacgctgaggcggaccttgtcgtcaagcaggcggccgagttcgtgcttgagtgcagcgag
attggagatgaccgcccgctcacaggctgttccttctcccgcgatgcgtcgatgctcgca
acaagttcctggagtgggatcatcaaagtatggagcatgccacaaataactaaaatcgca
accctgaaaggtcatacagaacgtgcaactgatgttgccttctctccagttgataacatc
ttagcgacagcctcagctgataaaactgccaaattatggaacagcgatgggtcacttcta
atgtctttcaatggtcacctggatcgtcttgctcgccttgcttttcatccatcgggaaag
tacctgggtacagctagctttgacaagacctggagattgtgggacatcaatactggaaca
gagcttctactccaagaagggcacagcagaagtgtatatggagttagctttcacccagat
ggttctttagctgcatcttgtgggcttgatgcacatgctcgagtttgggatctaagatct
ggaagattatactgtaccctcatagggcatgtgaaacctgttctaggagtcagcttctcc
cctaatggtcatctagttgcaactgcaagtgaagacaatttctgtcgaatatgggatttg
aggactagaaggatgttgtattctatacctgcacataagagtctcatctctcatgttaaa
tttgaaccccaggagggtcattatttagcgacatcttcctatgacactagagcagcgcta
tggtcaactcgggactacaaaccaatcaaaagtttggcaggacatgagtcgaaagttact
agtttggatattagtggagatggacaacagattgtgactgtttcacatgatagaactata
aagatgtggtcgtgcagaagcagcatacgggataatgagatggagttggattaa
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integrated database retrieval system
