Lolium rigidum (rigid ryegrass): 124698370
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Entry
124698370 CDS
T09103
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124698370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124698370
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124698370
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
PRP4
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
eIF2A
Beta-prop_SCAP
Beta-prop_NWD2_C
Beta-prop_NUP159_NUP214
WD40_like
Motif
Other DBs
NCBI-GeneID:
124698370
NCBI-ProteinID:
XP_047086808
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Position
3:146441251..146445022
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AA seq
520 aa
AA seq
DB search
MENPRPQAPGFTPPMAPLPLPLHPPIAPIPGAPPRAPAPGAASTSAAAESDDDDEVDYEV
SDDHRAARERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEREMERRDR
LRGLMVRLEADGQVDRLLRAQEDDQGAAANDEDDAEQIQYPFFTEGTKELLQARVNIAQY
SLPRAKARVERAKRRLADPDEDPDAEADLVVKQAGEFVLECSEIGDDRPLTGCSFSRDAS
MLATSSWSGIIKVWSMPQITKIATLKGHTERATDVAFSPVDNVLATASADKTAKLWNSDG
SLLMSFNGHLDRLARLAFHPSGKYLGTASFDKTWRLWDINTGTELLLQEGHSRSVYGVSF
HPDGSLAASCGLDAHARVWDLRSGRLYCTLIGHVKPVLGVSFSPNGHLVATASEDNFCRI
WDLRTRRMLYSIPAHKSLISHVKFEPQEGHYLATSSYDTRAALWSTRDYKPIKSLAGHES
KVTSLDISGDGQQIVTVSHDRTIKMWSCRTSIRDNEMELD
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccccagaccccaagcccccggcttcacccctcccatggctcctctccccctc
cccctccacccgcccatcgcgcccatcccgggggcccctccccgcgcccccgcgcccggc
gccgcctccacctccgccgccgccgagagcgacgacgatgacgaggtcgactacgaggtc
tcagacgaccaccgcgccgcgcgggagcgccacgagcgcgcggtgcaggagctcctgcag
cgccgccgcgcctacgccatggccgtgcccaccaacgactccgccgtgcgcgcgcgcctc
cgccgcctcggcgagcccatcacgctcttcggggagcgcgagatggagcgccgcgaccgc
ctgcgcggcctcatggtccgcctcgaggccgacggccaggtcgaccgcctcctccgcgcg
caggaggacgaccagggagccgcggccaacgacgaggacgacgccgagcagatccagtac
cccttcttcaccgagggcaccaaggaactgctgcaggcgcgcgtcaacatcgcgcagtac
tcgctgccccgcgccaaggccagggtcgagagggccaaacgccgcctcgctgaccccgac
gaggaccccgacgctgaggcagaccttgtcgtcaagcaggcgggggagttcgtgcttgag
tgcagcgagattggagatgaccgcccgctcacaggctgctccttctcccgcgatgcgtcg
atgctcgcaacaagttcctggagtgggatcatcaaagtatggagcatgccacaaataact
aaaatcgcaaccctgaaaggtcatacagaacgtgcaactgatgttgccttttctccagtt
gataacgtcttagcgacagcctcagctgataaaactgccaaattatggaacagcgatggg
tcacttctaatgtctttcaatggtcacctggatcgtcttgctcgccttgcttttcatcca
tcgggaaagtaccttggtacagctagctttgacaagacctggagattgtgggacatcaat
actggaacagagcttctactccaagaagggcacagcagaagtgtatatggagttagcttt
cacccagatggttctttagctgcatcttgtgggcttgatgcacatgctcgagtttgggat
ctaagatctggaagattatactgtaccctcatagggcatgtgaaacctgttctaggagtc
agcttctcccctaatggtcatctagttgcaactgcaagtgaagacaatttctgtcgaata
tgggatttgaggactagaaggatgttatattctataccagcacataagagtcttatctcg
catgttaaatttgaaccccaggagggtcattatttagcaacatcttcctatgacactaga
gcagcgctatggtcaactcgggactacaaaccaatcaaaagtttggcaggacacgagtcg
aaagttactagtttggatattagtggagatggacaacagattgtgactgtttcacatgat
agaacgataaagatgtggtcgtgcagaaccagcatacgggataatgagatggagttggat
taa
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