KEGG   Lolium rigidum (rigid ryegrass): 124699056
Entry
124699056         CDS       T09103                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    124699056
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lrd03019]
    124699056
Messenger RNA biogenesis [BR:lrd03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     124699056
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta WD40_MABP1-WDR62_2nd ANAPC4_WD40 WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_Aladin NBCH_WD40 Beta-prop_WDR19_1st Beta-prop_EIPR1 eIF2A Beta-prop_IFT122_1st Beta-prop_Vps41 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_TEP1_C Beta-prop_SPT8 CFAP43_N Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_WDR41 Beta-prop_WDR35_TULP_N Ge1_WD40 Beta-prop_VPS8 Beta-prop_WDR11_1st Tricorn_2nd Beta-prop_ACSF4 Beta-prop_RIG_1st WD40_2 WD40_like Beta-prop_LRRK2 Frtz Beta-prop_pof12 Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 124699056
NCBI-ProteinID: XP_047087386
LinkDB
Position
3:228517002..228519521
AA seq 322 aa
MKLAGLKSVDGAHEESIWAAAWVPAADHRPTALLLTGALDETVRAWRPDDLAAASPPARG
HALGVLSLAAHPAGVIAAAVSLDSYIRVFDVDSGASVATLDAPPSEVWGVQFHPKGVALA
AAGGGSGSVKLWDTEKWQPIASLPVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSMD
GTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTGCDDSHIHIYDAKEKGLIGAM
SGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINARASVQTMSNHSDQVWAVAFRPPGGE
GVRAGRLASASDDKSISLYDYS
NT seq 969 nt   +upstreamnt  +downstreamnt
atgaagctcgccggtctcaagtcggtggacggggctcacgaggagtcgatctgggcggcg
gcgtgggtccccgctgccgaccaccgccccacggcgctgctcctcaccggcgcgctcgac
gagaccgtccgcgcctggcgccccgacgacctcgccgccgcgtcgccgccggcgcggggc
cacgcgctcggggtgctctccctcgcggcgcacccggccggggtcatagccgccgcggtc
tccctcgacagctacatccgcgtcttcgatgtcgactccggagcttcagtcgccactctc
gatgccccgccctccgaggtctggggcgtccagttccaccctaagggtgttgctctggct
gcagctggtggtggcagtggatcagtgaaactctgggacacggagaagtggcagcctatt
gccagccttcctgttccacgcccagagggagctcgccctgataagactggcagcggcaag
tttgttctttcagttgcgtggagcccagacggcaagctcttagcatgtggatccatggat
ggcacaatagccgtgtacgacgcggtccgtatgaagtttctccaccatctggagggccac
cacatgccagtgaggtccatggtgttctccccggtggatcctcatgtgctcttcaccggc
tgcgacgactcccatatccacatatacgacgccaaggagaagggcctcatcggggccatg
tctgggcacgcgagctgggtgctgagcatcgacgtgagcccggatggcatggcggtggcg
acgggctccagcgaccgcaccgtacggctctgggacatcaatgcgagggcgtcagtgcag
acgatgagcaaccactccgaccaggtctgggctgttgcgttccggccgccgggaggggaa
ggagtccgtgcgggacggctcgcgagcgcctcggacgacaagagcatctccctctacgat
tactcctag

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