Lolium rigidum (rigid ryegrass): 124700301
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Entry
124700301 CDS
T09103
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd00040
Pentose and glucuronate interconversions
lrd01100
Metabolic pathways
Module
lrd_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
124700301
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
124700301
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
124700301
NCBI-ProteinID:
XP_047088407
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Position
3:280476866..280478311
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AA seq
404 aa
AA seq
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MPARRSNLALLAHLCVSLAAVARGAAATSYSVVDYGAVADGRTDCASAFLSAWAAACAAE
GSASVVVPAGEFLVSRARFSGPCRSGAVTVDIAGTVLAPVPYAGVQLWIVFQNVDGVSIN
GGTLDGRGQAYWACRRAGGGSSCPVATRSLTIYRSRNVLVRGLTSLNSAGIHVTVQSSAG
VAIVDTAVSAPGDSPNTDGIHIKQSSDVTVRNARIGTGDDCISMVEGSSDVWIQGVSCGP
GHGISIGSLGDTPEQLAVRNITVRAVTLAGTTNGLRIKTWAKANSGLVDGVAFSDVVMRD
VRNPIIVDQNYCPGNVSCPTEGSGIKITNVSFTDVVGTSATLVAVRFDCSPSRPCTGITM
RNVRLSYAEQPGAAESLCRNAHGVAYGQVVPPNCLADQEMLCYK
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgccggcacggcgctccaacctcgctctcctcgcccacctgtgcgtgtcactcgccgcc
gtggctagaggcgccgccgcgacgtcctacagcgtcgtcgactacggcgccgttgccgac
ggccggacggactgcgccagcgcgttcctcagcgcgtgggccgcggcgtgcgcggcggag
ggctcggcctcggtggtcgtgccggcaggcgagttcttggtgtccagggcgaggttcagc
gggccgtgccggagcggcgcggtgaccgtggacatcgcgggcacggtgctcgcgcccgtg
ccgtacgccggcgtgcagctctggatcgtgttccagaacgtggacggggtgtccatcaac
ggcggcacgctagacggcaggggccaggcgtactgggcgtgccggagagccggcggcggc
tcgtcatgccccgtcgccaccaggtcgttgacgatataccggtctaggaacgtgctggtc
cgaggcctgacgtcgctgaacagcgccggcatccacgtgacggtccagtcgagcgccggc
gtggcgatagtggacacggcggtgtcggcgccgggggacagccccaacacggacggcatc
cacatcaagcagtcgagcgacgtcaccgtccggaacgccaggatcggcaccggcgacgac
tgcatctccatggtcgagggctcgtcggacgtgtggattcaaggcgtcagctgcggcccg
gggcacggcatcagtattgggagcctgggcgacacgccggagcagctggctgtgcggaac
atcactgtcagggccgtgacgctcgccgggacgaccaacgggctgcggatcaagacgtgg
gccaaggcgaacagcgggctcgtcgacggcgtcgccttctccgacgtcgtcatgagggac
gtccggaacccgatcatcgttgaccagaactactgccccggcaatgtcagctgccccacc
gagggatcggggatcaagatcactaatgtctcattcaccgacgtcgttgggacgtcggcg
acgctggtggcggtgcggttcgactgcagcccgagccggccatgcaccggaatcaccatg
cgcaacgtccggctgagctacgcggagcagccgggagcggccgagtcgctctgccggaat
gcgcatggagttgcgtatgggcaggttgttccaccgaattgcctggctgaccaggaaatg
ctttgctacaagtga
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