KEGG   Lolium rigidum (rigid ryegrass): 124700900
Entry
124700900         CDS       T09103                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03030  DNA replication
lrd03410  Base excision repair
lrd03420  Nucleotide excision repair
lrd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    124700900
   03410 Base excision repair
    124700900
   03420 Nucleotide excision repair
    124700900
   03430 Mismatch repair
    124700900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lrd03032]
    124700900
   03036 Chromosome and associated proteins [BR:lrd03036]
    124700900
   03400 DNA repair and recombination proteins [BR:lrd03400]
    124700900
DNA replication proteins [BR:lrd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    124700900
  DNA Replication Termination Factors
   ELG1-RFC complex
    124700900
Chromosome and associated proteins [BR:lrd03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    124700900
DNA repair and recombination proteins [BR:lrd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     124700900
  Check point factors
   HRAD17(Rad24)-RFC complex
    124700900
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 RuvB_N Sigma54_activ_2 Mg_chelatase AAA_22 AAA_5 DUF815 AAA_16 nSTAND3 AAA_11 ABC_tran AAA_2 NPHP3_N RsgA_GTPase AAA_24 AAA_29 FtsK_SpoIIIE ATPase_2 DUF5906 TsaE RNA_helicase
Other DBs
NCBI-GeneID: 124700900
NCBI-ProteinID: XP_047088912
LinkDB
Position
3:399023791..399027878
AA seq 354 aa
MLWVDKHRPKTLDKVIVHEQVAQNLKKLVAEQDCPHLLFYGPPGSGKKTLIMALIKQMFG
AGAEKVKMENKTWKIDTGTRTFDLELAMLSSSHHVEMNPSDAGFQDRYVVQEVIKEMAKS
RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY
PFSPNQVPPPLDWEQYVSEIATDILSEQSPKRLYSVRQKFYELLVNCIPPESILKKLLTE
LMKKLDADLKHEVCRWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtggacaagcaccggccgaaaaccctagacaaggtcatcgtccatgagcag
gtcgcgcagaacctcaagaaactcgtggcggagcaggactgcccgcacctgctcttctac
gggccgccggggtccggcaagaaaaccctaatcatggcgctcatcaagcagatgttcggc
gccggtgccgagaaggtgaagatggagaacaagacctggaagatagatactgggacgagg
acatttgatctggagctggcgatgctgtcgagctcccaccatgtggaaatgaaccccagc
gatgcggggtttcaggacagatatgttgttcaggaggtcataaaagagatggcaaagagc
aggccaattgatgcaaagggcaagagagcattcaaagtgcttgtcctaaatgaagttgat
aagctctcacgagaagcacagcattctctccgtaggacaatggagaagtacagtgcatct
tgtaggctgatattatgctgtaatagctcctcaaaggtgacagaagctgtaagatcccgt
tgcctgaatgtgcgagtgaatgcacctagcgaagatcagattgtacaagttctggagttc
attgggaagaaagaaaacctgcaacttccatttggatttgctgctcggatagcagctcag
tcaaaccgcaacttgaggcgggcaatattatttttcgagacatgcaaagtccagcaatat
ccgttttcaccgaatcaagtgccacctcctcttgactgggagcagtatgtgtctgaaata
gcgactgatatcttgagtgaacaaagccctaaaaggctatactctgtacgccagaaattc
tacgagttgcttgtcaattgtatcccacctgaaagcatcttgaagaaattgttgactgag
ttgatgaagaagttagatgctgatctgaaacatgaagtttgtcgctgggctgcgcactat
gaacacaagatgcgccttgggtccaaggccatttttcatctggaagctttcgtggccaag
ttcatgagcatttacaaggagttcttggtcgccacatttggttga

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