Lolium rigidum (rigid ryegrass): 124700955
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Entry
124700955 CDS
T09103
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd00040
Pentose and glucuronate interconversions
lrd01100
Metabolic pathways
Module
lrd_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
124700955
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
124700955
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Gene cluster
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
124700955
NCBI-ProteinID:
XP_047088979
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Position
3:402930093..402931337
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AA seq
414 aa
AA seq
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MASSVRVTKLVLSMAALVMLLLCSTTAATSNAKETQQNVFILDNYGARGDGQHDDTQALA
KAWNMACSSSRPAVLLVPKGKSYLLKPIALSGPCKSTVTLTVEGTLVAPASRSAWSEDNI
SRWIVIQGVTGLTVTGGGTINGNGDIWWKNSCKTNKALSCTTAPTALTFHRCNNLKVDNL
KIVNSQQMHVSVEDCTNVQLARLSITAPGTSPNTDGIHITRSTVVQVRDCVIKTGDDCMS
IEDGTHNLLVTKVVCGPGHGISIGSLGDDNSRAEVSGITVDSVQLYGTTNGVRIKTWQGG
SGYAKGITFQNIIMDNVQNPIIIDQNYCDSAKPCMKQESAVEISNVVFKNIRGTTISKDA
INLSCSNQASCTNIVLENIDLKMERNQGETESTCQNAQWRKSGTVVPQPCEAKN
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgagtgtgagagtgactaagctcgttttgtccatggcggctctcgtgatgctc
ttgctgtgcagtactacagccgccacgagcaatgccaaggagactcagcagaacgtgttc
atcctcgacaactacggcgcccgcggcgacgggcagcacgacgacacgcaggcactggcc
aaggcgtggaacatggcgtgctcctcatcacggccggccgtgctgctcgtccccaagggg
aagagctacctgctcaagccgatcgccctctccggcccgtgcaagtccaccgtcaccttg
acggtggagggcacgctggtggctccagctagcaggtccgcatggagcgaggacaacatt
agtcgctggatcgtgatccaaggcgtcaccggcctcactgtcaccggtggcggcacgatc
aatgggaacggcgacatttggtggaagaactcgtgcaagaccaacaaagctctgtcatgc
acaacggctcccacagctctaacatttcaccggtgcaacaatttgaaggtcgacaacctg
aaaattgtgaacagccaacagatgcatgtgtccgttgaggattgcaccaatgtgcagctg
gctcgcttgtccatcacggcgcctggcaccagcccaaacaccgacggcatccacatcacc
cggagcacagttgtccaagttagagattgtgtcatcaagacgggggatgattgcatgtcg
atcgaggatggcactcacaatcttctcgtcaccaaggttgtttgtggtccggggcatgga
atcagcatcggaagcttgggtgacgacaactccagagctgaggtttctggcattacagtt
gactccgtacagttatatggcacaaccaatggcgtccggatcaagacgtggcagggagga
agcgggtacgccaagggtatcacgttccagaacattatcatggacaacgtgcaaaacccg
atcatcattgaccagaactactgcgactcagctaagccatgcatgaaacaagaatctgcg
gtggagatcagcaatgttgttttcaagaacattagagggacaaccatatccaaggatgct
atcaaccttagctgcagtaaccaggcgtcatgcactaacattgtcttggagaatattgac
ctgaaaatggagcgcaaccagggagaaaccgaaagcacctgccaaaacgcccaatggcga
aaatctggaactgttgttccacaaccgtgtgaagcaaaaaactaa
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