KEGG   Lolium rigidum (rigid ryegrass): 124700958
Entry
124700958         CDS       T09103                                 
Name
(RefSeq) RNA-binding protein Y14B-like
  KO
K12876  RNA-binding protein 8A
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03013  Nucleocytoplasmic transport
lrd03015  mRNA surveillance pathway
lrd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124700958
  09122 Translation
   03013 Nucleocytoplasmic transport
    124700958
   03015 mRNA surveillance pathway
    124700958
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lrd03019]
    124700958
   03041 Spliceosome [BR:lrd03041]
    124700958
Messenger RNA biogenesis [BR:lrd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     124700958
Spliceosome [BR:lrd03041]
 Complex C
  Other components
   EJC/TREX
    124700958
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_3
Other DBs
NCBI-GeneID: 124700958
NCBI-ProteinID: XP_047088981
LinkDB
Position
3:complement(403096073..403101250)
AA seq 193 aa
MATVAEDVEFAEYGRVDDDEDDDGMDEDDEAAARALPVPHIATPASARARGRFLGRSASV
LASSRDRFDSIPTSPHGGPQRSIEGWIILVSGVKEDAEESDIYDAFCDFGHVKDLHLNLE
RRTGYGKGYVLVEYESFEEAQTAIRAMDGKQLLTKTIHVDWAFNRGPIQKVTSTRPVRGR
SRTPPRRLAALTY
NT seq 582 nt   +upstreamnt  +downstreamnt
atggcgacggtggcggaggacgtggagttcgcggagtacggccgggtcgacgacgacgag
gacgacgacgggatggacgaggacgacgaggccgcggcgcgcgcgctccccgtgccccac
atcgccacccccgcgtcggcccgcgcccgcggacgcttcctcggccgcagcgcctccgtc
ctcgcctccagccgcgaccgcttcgactccatccccacctccccgcacggcggcccccag
cgctcaattgaaggatggataatacttgtctcgggtgtgaaggaagatgcagaagaaagt
gatatatacgatgctttctgtgactttggtcatgtcaaggacttgcatttgaatctggaa
cgccgcactggatatggaaagggatatgtattggttgaatatgaaagctttgaggaagca
caaactgcaatcagagcaatggatgggaagcagctgttaacaaaaactatccatgtcgat
tgggcatttaacagaggtcccatccaaaaggtcacgagtacgaggccagtacgcggacgc
tctaggactccacctcgcaggctcgctgcgttgacatactga

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