Lolium rigidum (rigid ryegrass): 124700958
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Entry
124700958 CDS
T09103
Name
(RefSeq) RNA-binding protein Y14B-like
KO
K12876
RNA-binding protein 8A
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124700958
09122 Translation
03013 Nucleocytoplasmic transport
124700958
03015 mRNA surveillance pathway
124700958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124700958
03041 Spliceosome [BR:
lrd03041
]
124700958
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124700958
Spliceosome [BR:
lrd03041
]
Complex C
Other components
EJC/TREX
124700958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_3
Motif
Other DBs
NCBI-GeneID:
124700958
NCBI-ProteinID:
XP_047088981
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All DBs
Position
3:complement(403096073..403101250)
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AA seq
193 aa
AA seq
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MATVAEDVEFAEYGRVDDDEDDDGMDEDDEAAARALPVPHIATPASARARGRFLGRSASV
LASSRDRFDSIPTSPHGGPQRSIEGWIILVSGVKEDAEESDIYDAFCDFGHVKDLHLNLE
RRTGYGKGYVLVEYESFEEAQTAIRAMDGKQLLTKTIHVDWAFNRGPIQKVTSTRPVRGR
SRTPPRRLAALTY
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggtggcggaggacgtggagttcgcggagtacggccgggtcgacgacgacgag
gacgacgacgggatggacgaggacgacgaggccgcggcgcgcgcgctccccgtgccccac
atcgccacccccgcgtcggcccgcgcccgcggacgcttcctcggccgcagcgcctccgtc
ctcgcctccagccgcgaccgcttcgactccatccccacctccccgcacggcggcccccag
cgctcaattgaaggatggataatacttgtctcgggtgtgaaggaagatgcagaagaaagt
gatatatacgatgctttctgtgactttggtcatgtcaaggacttgcatttgaatctggaa
cgccgcactggatatggaaagggatatgtattggttgaatatgaaagctttgaggaagca
caaactgcaatcagagcaatggatgggaagcagctgttaacaaaaactatccatgtcgat
tgggcatttaacagaggtcccatccaaaaggtcacgagtacgaggccagtacgcggacgc
tctaggactccacctcgcaggctcgctgcgttgacatactga
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