Lolium rigidum (rigid ryegrass): 124701297
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Entry
124701297 CDS
T09103
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124701297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124701297
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
124701297
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
Toxin_R_bind_C
OB_RNB
Motif
Other DBs
NCBI-GeneID:
124701297
NCBI-ProteinID:
XP_047089304
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All DBs
Position
3:complement(24203532..24212805)
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AA seq
931 aa
AA seq
DB search
MLQSKSFVKKTKQGRVVKVVREHYLRDDIPCGAASCSSCDAAARRLNADAAAILVIDTNV
VLHQIDLLENPAIEDVVVLSVVLDEVKNKNLSVYNRLKALCTNTARRFFVFTNEHHRDTY
IKEMAGESPNDRNDRAIRVAARWYQSHLGDSARVLLVTNDRDNKRKATEEGLNAETVESY
VRSLAQPGLLDLVVVPTSGDITMEDAEDLRPSKRKVIYIEHKPMSEITSGLRCGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIRGRSNMNRAFDGDIVSVELLPQDQWHETKSFIADDD
EDDNEGDVRLAPDSADDAPRNTNSTQSTVASVSSRPVGRVVGIIKRNWNSYCGSLEPMPM
PAGSGGVAHALFVSKDRRIPKIRIQTRQLGNLLNKRIVVAVDSWDVMSRYPSGHYVRTIG
DIGDKETETEVVLIENDINTRPFSTQVLACLPSLPWTLSPEDLANPNRQDLRQVRVFSVD
PPGCRDIDDALHCTPLPNGNFEVGVHIADVTNFVHPGTPLDEEASQRATSVYLVGQRIDM
LPKPLTEDVCSLRADTARLAFSVIWEMTPDAHIIATRYTKSVIQSCAAMSYVEAQARMDD
SRMVDPLTVDLRNLNSLAKIMRHRRCERGALTLASAEVKFEIDSETHDPLDIGIYQIREA
NQMIEEFMLAANISVAEKILQHYPLCSLLRRHPSPTKEMLEPLLRTASSVGLNLDASSSK
ALAESLDNAKRDDPYFNKLIRILATRCMTQAVYFCSGDMSLSEYYHYGLASALYTHFTSP
IRRYADVIVHRLLAAALDIAKLPPIFQDGPQLTGIADNLNYRHRNAQMASRASVELHTLI
YFRTRPVDTEARIVKIKANGFIVFVPKFGIEGPIYLTSKGDKGGDWVVDEVNQKVTKPGA
NISYAVLQSVMIHMEVVEPQAHRPKLQLTLI
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagagcaagtccttcgtgaagaagacaaagcaagggcgcgtcgtcaaggtggtc
cgggagcactacctccgcgacgacatcccctgcggcgccgcctcctgctcctcctgcgac
gcggccgcgcgccgcctcaacgccgacgcggcagccatcctcgtcatcgacaccaacgtc
gtgctccaccagatcgatttgctggagaatccagcgattgaagatgtcgtcgtgctctcg
gtggtgctggacgaagtgaagaataagaacctctccgtgtacaacaggctcaaggcccta
tgcaccaacacggctcgaaggttcttcgtcttcaccaacgaacaccacagggatacttac
atcaaagagatggccggggagagcccgaatgatcgtaatgatagagcaatccgtgttgct
gcacgttggtaccaaagtcatcttggtgacagtgccagagtgttgcttgttacaaatgat
cgagataacaaacgaaaagctaccgaagaaggtctaaatgcagagacagttgagtcatat
gtaagatcgcttgcacagcctggtttgcttgatttggtggttgttccaactagcggagat
attaccatggaagatgcagaagatcttagaccatccaaaaggaaagtaatttacattgag
cataaacctatgtcagaaattacatctggtctacgttgtggtatttaccatcaagggaag
cttcgagttaatcggtacaatccatttgaagcatatgttggaagtgagagcatcggcgat
gagattattatccgtggccgttcaaatatgaacagggcctttgatggagatatagtttct
gttgaacttctgccacaagatcaatggcatgagacgaagtcatttattgcagatgatgat
gaagatgataatgaaggggatgtccgtttggctccagatagtgcggatgatgctccacga
aacaccaattccacgcaatcaacagttgcttctgtctccagcagaccagttggacgtgtt
gttggtatcatcaaacggaattggaattcgtattgtggatccttggagccaatgcccatg
cctgctggtagcgggggcgttgctcatgctctatttgtgtcgaaagatcgtagaattcct
aagatccggattcaaactagacagctggggaatcttttaaataaaaggattgtcgttgca
gttgactcctgggatgtcatgtctagatacccatcaggacactatgtaaggactatagga
gatattggcgacaaagaaaccgaaacagaggttgtcctaatagagaatgatattaacaca
agacctttctctacacaagtccttgcttgtttgccatctttgccttggacattatcacct
gaggatttggctaatcccaataggcaagacctgcggcaagtgagagtctttagtgtggac
ccacctggttgtagggatattgatgatgcactacattgcacgccacttccaaatgggaat
tttgaagttggagttcatattgccgatgtcactaattttgtccatcctggtactcctctt
gacgaggaggcttcacaaagggcaacttctgtttatcttgttggacaacggattgacatg
cttccaaagcctctaactgaagatgtttgttctcttcgtgctgatactgcaaggcttgca
ttctctgtcatttgggaaatgacacctgatgctcatatcatagctacaagatatacaaag
agtgttatccagtcttgtgctgcaatgtcttatgtggaagcccaagcaagaatggatgac
agccgtatggtcgacccactgactgtagacttgcggaacttaaattcattagcaaagata
atgagacatcggcgttgcgaaaggggggctctgactcttgcttcagcagaagtcaaattc
gaaattgatagcgaaactcatgatcctcttgacataggaatctatcaaattcgtgaggca
aatcaaatgattgaagagttcatgttggcagcgaatatttctgttgctgagaagattttg
cagcactatcccttgtgttcattgctacggcgtcatcctagcccaacaaaggagatgctc
gagccattactccgtactgcctcttctgttggcctaaatctggacgcgtcatcctcaaaa
gcattagctgaatcacttgataatgcaaagagagatgacccatacttcaacaagcttatc
aggattttggcaactagatgcatgacacaagcagtttatttttgcagtggagatatgagc
ttgtctgagtattaccattatggtctcgcatctgctctttacactcatttcacttctcct
attcgcagatatgcagatgtaattgtgcataggttgctagctgctgctctagatatagca
aaacttccaccaatctttcaggatggtccacagctcacaggcattgctgacaacttgaat
tataggcaccgaaatgcccagatggcaagcagagcatctgttgagctacacaccctcata
tatttcaggacaaggccggtcgacactgaagctagaatagtaaagatcaaggcaaatggt
ttcatagtcttcgttccaaagtttggcatagaagggccaatctatcttacatcgaaggga
gacaaagggggtgactgggtagtagacgaggtgaaccagaaagtaaccaagcccggagca
aacataagctatgctgtgttgcagagtgttatgattcatatggaagtggtggagcctcag
gctcaccgcccgaagctgcagctcaccctcatataa
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