Lolium rigidum (rigid ryegrass): 124701459
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Entry
124701459 CDS
T09103
Name
(RefSeq) cell division control protein 48 homolog D-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124701459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124701459
03009 Ribosome biogenesis [BR:
lrd03009
]
124701459
04131 Membrane trafficking [BR:
lrd04131
]
124701459
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrd04147
]
124701459
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124701459
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
124701459
Membrane trafficking [BR:
lrd04131
]
SNARE
SNARE associated proteins
Others
124701459
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124701459
Exosome [BR:
lrd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124701459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_33
AAA_16
AAA_2
AAA_5
AAA_22
CDC48_2
AAA_14
TIP49
NPHP3_N
AAA_17
RNA_helicase
nSTAND3
Mg_chelatase
AAA_28
AAA_18
IstB_IS21
ABC_tran
Vps4_C
ATPase_2
Parvo_NS1
Viral_helicase1
AAA_7
AAA_lid_PRS2_C
Zeta_toxin
NB-ARC
ResIII
DUF815
TsaE
NACHT
Sigma54_activ_2
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
124701459
NCBI-ProteinID:
XP_047089476
LinkDB
All DBs
Position
3:complement(38618893..38623435)
Genome browser
AA seq
812 aa
AA seq
DB search
MATPTPQGEASSSDPKGAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQ
LFRGDTVLLKGKKRKDTICIVLADDTCEEPKVRMNKTVRKNLRVRLGDVVSVHQCPDVKY
GKRVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDP
AEYCIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFK
SIGVKPPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE
EAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN
SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVELEHISRDTHGYVGADL
AALCTEAALQCIREKMDIIDLDDETIDAEILNSMAVTNDHFKTALTTSNPSALRETVVEV
PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI
ANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVG
DAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDVE
SRLQIFKACLRKSPVAKDVDLDALAKYTQGFSGADITEICQRSCKYAIRENIEKDIERER
RKKDNPEAMEEDETDEIAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSE
FRFPDAPASGAAAAADPFASSAAAAEDDDLYS
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggccaccccgaccccgcagggcgaggcctcctcctccgatccgaagggggcgaagaag
gactactcgacggcgatcctcgagaggaagaagtcgcccaaccgcctcgtcgtcgacgag
gccaccaatgacgacaactccgtcgtcgcgctccaccccgacaccatggagcgcctccag
ctcttccgcggcgacaccgtcctcctcaagggtaagaagagaaaggacacaatctgcatt
gtgcttgcagacgacacatgtgaggagccaaaggtcaggatgaacaagaccgtcaggaag
aacttgagagtgagacttggcgacgtggtgtctgtccatcaatgcccagatgtcaagtac
gggaagcgtgtgcacattcttcctattgatgacacggttgaaggcattactgggaacttg
tttgatgccttcttgaagccatacttccttgaagcttaccgccctttgagaaagggagac
cttttccttgtgaggggtggaatgaggagtgtggaattcaaagttatagagactgaccct
gcagagtattgcatcgttgcacctgacactgagatattctgtgatggtgagcctattaag
agggaggacgaggaaaggcttgatgaggttggctatgatgatgttggtggagttaggaag
caaatggcccagatcagagaactggttgaactcccactgcgtcatcctcagctcttcaag
tctattggcgtgaagcctcctaagggcatattgctgtttggaccacctggctctggcaag
acccttatcgctagagctgttgctaatgaaactggtgcattcttctttctgattaatggc
ccagaaattatgtccaagctagcaggagaaagtgagagcaatctcaggaaggcatttgaa
gaagctgagaagaatgcaccatcaatcattttcattgatgagattgattcgattgcccca
aagagagaaaagaccaatggagaggttgagaggcgtattgtttcacagctgttgactctt
atggatgggctcaagtcccgtgcacatgttattgttatgggcgctacaaaccgcccaaac
agtattgatcctgccctcagaagattcggtagatttgatcgggagattgacattggtgtc
cctgatgaagttgggcgcctggaagttctccggattcacaccaaaaacatgaagttggct
gaggatgttgaactggaacacatttcaagagacacccatgggtatgttggtgctgatctc
gctgctctttgcactgaggctgctctccagtgcattcgtgagaaaatggatattatagat
cttgatgatgagaccattgatgctgagattctgaactcaatggctgtgacgaacgaccat
ttcaagactgcattaacaacaagcaacccatctgctctccgtgaaactgttgttgaagtc
cccaatgtctcttgggaagatattggtggtctggagaatgtcaagagggagttgcaggag
accgtccaataccctgtggagcatccagagaaattcgagaagtttggcatgtctccttcc
aaaggtgttttgttctacggccctcctggttgtggtaaaaccctgttggcgaaggcaatt
gctaatgagtgccaggctaacttcatcagtatcaagggacctgagctgcttaccatgtgg
tttggagagagtgaggctaatgtgcgtgagatctttgacaaggctagggggtcagcgcca
tgtgtcctcttctttgatgagcttgactcgattgctacccagagaggaagcagtgttggg
gatgctggaggtgctgctgatagagtcctcaaccagctcctgactgagatggatggcatg
aacgccaagaaaactgtgttcatcatcggtgccaccaacaggcctgacatcattgaccct
gcgctgcttaggccagggcgccttgatcagcttatctacatccctcttcctgatgttgag
tcgaggctccagatcttcaaggcttgcctcaggaagtcccctgtggccaaggatgttgat
ctggacgctctcgccaagtacacccaagggttcagtggtgctgatatcactgaaatttgc
cagcgttcttgcaaatatgccatcagggaaaacatcgaaaaggacatcgaaagggagagg
cggaagaaggacaaccctgaagccatggaggaagacgagactgatgagattgctgagatc
agggctgctcactttgaagagtcgatgaagtatgcgcgccgtagtgtgagcgacgccgac
atccggaagtaccaggcctttgcccagactctgcagcaatcccgtggatttggcagcgag
ttccggttccctgacgctcctgcttcaggcgcagccgctgctgcagatccttttgcgtca
tcagccgctgcggcggaggatgatgatttatatagctag
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