Lolium rigidum (rigid ryegrass): 124701474
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Entry
124701474 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124701474
03015 mRNA surveillance pathway
124701474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124701474
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124701474
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124701474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
Motif
Other DBs
NCBI-GeneID:
124701474
NCBI-ProteinID:
XP_047089498
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All DBs
Position
3:39645191..39649827
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AA seq
508 aa
AA seq
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MADGAAKPEPEKKSWADVEEEEEAKAKAEAEADLAAAAAAPSSSSAVTEPEVEAQAKQIE
ALSLTVPDDEGGSGAEGPPLLDDSDDSQIQAVTSGGTVYESATTFEDVNLTPELLKGLHE
EMGFSRPSKIQAITLPMILTPPHKDLVAQAHNGSGKTTCFVLGMLSRVDPNRKVPQAICI
CPTRELAQQNKSVLMRMGKFTGITCACAIPPAQKDYVPISRMAPVTDQIVIGTSGTLMKW
IGNKKLSTRDIKILVFDEADHMLAEEGFKADSDRIMKDLKRNQAGCQVLLFSATFNDKVK
DFVTGVIKDGNQIFVKKEDLTLEKVKQYKVRVPDEAAKIEVIRDKILEFGQKVGQVIIFV
RTRISTKNVHNALTKEDYVCSSIQGSLDQSEREKVIQEFKDGYTKVLISTDVLARGFDQA
QVNLVINYDMPIKFNTRDEPDYEVYLHRIGRAGRFGRKGAVFNLLSGGTDDVVMTKIENY
FQHKVPEVPNWKSEDNFETALKDAGLLE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggccgacggcgccgccaagcccgagccggagaagaagtcctgggccgacgttgaggag
gaagaggaggccaaggccaaggcagaggcagaggccgacctcgccgccgccgccgccgcc
ccctcctcttcgtccgccgtcaccgagccggaggtggaagcgcaggcgaagcagatcgag
gcgctctcgctcaccgtgccggacgacgaaggcggcagcggcgccgagggcccgcctctg
ctcgatgactccgacgactcccaaatccaagccgtgacctcgggcggcacggtgtacgag
tcggcgacgaccttcgaggacgtgaacctcacgcccgagctgctcaaggggctgcacgag
gagatgggcttcagccgccccagcaagatccaggccatcacgctccccatgatcctcacg
ccgccacacaaggacctcgtcgcgcaggcgcacaacggctccggcaagaccacctgcttc
gtcctcggcatgctcagccgcgtcgaccccaaccgcaaggtcccacaggccatctgcatc
tgccccaccagggagctcgcccagcagaataaatctgtgctcatgaggatgggcaagttt
accggcattacctgtgcctgcgccatcccgcccgcccagaaagattatgtgcccatctcc
aggatggctccagtcaccgatcagatcgtcattggcacttctgggacgctcatgaagtgg
attggcaacaagaagctttccactagggacatcaagattcttgtcttcgatgaggcagac
catatgcttgctgaggaaggctttaaggctgattctgacaggatcatgaaggatctaaaa
agaaatcaagctggctgccaggtgcttctcttttctgcgaccttcaacgataaagtgaag
gattttgtcacaggtgttattaaggacggaaaccaaatatttgtgaaaaaggaagatctt
actttggagaaagtaaagcaatataaagtccgagtccctgacgaggcagccaaaatagag
gttataagggacaagatccttgagtttgggcaaaaggttggacaggttatcatatttgtc
agaacaaggataagtactaagaatgttcataatgctttgacaaaagaggactatgtgtgc
tcctcaattcaaggaagtctagaccaatcagaaagggaaaaagtaatacaggagttcaaa
gatgggtataccaaggttcttatatcaactgatgttcttgctcgaggttttgaccaagca
caggttaacctggttatcaactatgacatgccgatcaagtttaatacgagagatgaaccc
gattatgaggtgtacctgcacagaattggcagagctgggcgctttggtcgaaaaggagct
gtgttcaacctgctatctggtgggactgatgatgtcgtgatgacgaagattgagaactac
ttccagcacaaagtacctgaggtacccaactggaaaagcgaggataattttgagactgca
cttaaggacgctggtttacttgagtaa
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