Lolium rigidum (rigid ryegrass): 124701528
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Entry
124701528 CDS
T09103
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124701528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lrd03009
]
124701528
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
124701528
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Utp21
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_Aladin
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_VPS8
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_ACSF4
NBCH_WD40
Beta-prop_EIPR1
PEP5_VPS11_N
Beta-prop_SPT8
Beta-prop_SCAP
WD40_RFWD3
Nucleoporin_N
Beta-prop_NWD2_C
WD40_like
Beta-prop_DCAF12
VPS8_N
Nbas_N
BCAS3_WD40
Motif
Other DBs
NCBI-GeneID:
124701528
NCBI-ProteinID:
XP_047089567
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Position
1:349501161..349508842
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AA seq
913 aa
AA seq
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MGIFEPFRAIGYITTGGVPFSLQRLGTETFVTVSVGKAFHVYNCAKLNLVLAGPQLPKKI
RALASFKEYTFAAYGSDIAVFKRTDLVVTWTRHEEKVNRLYLFGEYILSADTKGDIFIWA
FRGADPSSDPVGNISLGEKFTPTCIMHPDTYLNKVIIGSEEGPLQLWNISTKKKIYDFKG
WESPVRCCVSSPALDMVAVGCSDGTIHVHNIRYDEELMSFNHQIRGAVTALSFRTDGQPL
LASGGSSGVISIWNLEKRRLHSVIREAHDGSIVSLHFFANEPILMSSAADNSIKMWIFDN
NEGDARLLRFRSGHSAPPRCIRFYGNGKSILSAGQDRAFRLFSVVQDQQSRELSQRHVSK
RAKKLKVKEAEIKLKPVIAFDCAEIRARDWCNVVTCHVDTPKAYVWRLQNFVIGEHILTP
SSGSQSPIKACAISACGNFTVLGTEGGWIEKFNLQSGISRASYIDGSLALQSAHEGEVVG
LACDATNGSLISAGYRGDIKVWDFKSCKLKSKFNVGKSVTKIAYHRANGLLATVADDMVL
VLFDTVSLKMVRRFEGHTDRITDLCFSEDGKWLISSSMDGTLRIWDISLARQIDAMHVDV
SITSVSMSPNMDVLATTHVDQNGVYLWINQALFSPSTNVDSYASGKHVRNVLLPTVSSAE
RSEEEESIQNSQDANQSNIKPFVITNHQIPNMITLSLLPRSQWQSLTNLDIIKVRNKPVE
PPKKPEKAPFFLPSVPSLSGDILFDPPASKETDDSTTDGTSHKTMADLSSHFCQLLQSCG
ELQNYSAFTDYLKGLSPSSLDMELRMLQIIDDDDDDDDDDEMEDEEEPRPELESISLLLD
YFIHELSCRNNFEFVQAVLKLFLKIHGETIRRHSMLQDKVKKILDVQSLVWQKIDKMFQS
TRCMVTFLSNSQF
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggggatcttcgagccgttccgcgcgatcggctacatcaccaccggcggcgtgcccttc
tccctgcagcgcctcggcaccgagaccttcgtcaccgtcagcgtcggcaaggccttccac
gtctacaactgcgccaagctgaatttggtccttgctggacctcaactgcccaagaagatc
cgtgccctcgcatccttcaaggagtacacgtttgctgcatatggaagcgatatagcggtc
ttcaaaaggactgacctggttgttacctggactagacatgaagaaaaggtcaacaggttg
tacctgtttggagaatacattctcagtgcagatactaaaggtgatatatttatctgggcc
ttcagaggagccgacccaagcagtgatcctgttggtaacatatcactgggagaaaagttt
actccgacctgcatcatgcatccggatacttacctaaataaggtcattattggtagtgaa
gaaggacccttgcagctgtggaatatcagcacgaagaaaaaaatatatgatttcaagggt
tgggagtcaccggtacgttgctgtgtttcttcacctgctctggatatggttgcagtcggt
tgctccgatggaacaattcatgttcacaatatacgatatgatgaagagttgatgtctttc
aaccatcaaattcgtggtgctgtaactgccctgtcatttcgaacagatgggcagcccctt
ctagcttctggaggttcctcgggtgttattagcatttggaatcttgagaaaagaaggctg
cactctgtgattagggaggcccatgatggttctatagtatcacttcattttttcgccaat
gaacctattttgatgagctcagcagctgataattcaatcaaaatgtggatatttgataat
aatgaaggagatgcccgtctgttacgatttcgaagtggacatagtgctccacctcggtgc
ataagattctatggcaatggaaaatccatcttatctgctggtcaagatcgtgcctttcgt
cttttctctgttgttcaggatcaacaaagcagagagctttctcaacggcatgtgtcaaaa
agagcaaaaaagctcaaagtaaaggaggcagagatcaagctaaaaccagttattgcattt
gattgtgctgagatacgagctcgtgattggtgtaatgttgttacatgccacgtggatact
ccaaaggcatatgtatggcgtcttcagaactttgttataggcgaacatattctgacacca
tcatcaggctcgcagtcgccgattaaggcttgtgcgataagtgcatgtggtaattttact
gttttgggcaccgaaggtggttggattgaaaaatttaaccttcaatctgggataagtcgt
gctagttacattgatggctcgctggcattgcaatctgcacatgagggtgaagttgttgga
ttagcttgtgatgctacaaatggctctctgattagtgctggataccgtggtgatattaag
gtgtgggattttaaaagttgcaagctaaaatccaagttcaatgttggtaaatctgtaact
aagattgcatatcaccgggcaaatggtcttcttgctactgtagcggatgatatggtactt
gtattgttcgatacagtgtcgttgaaaatggttcgcagatttgaaggacatacagaccgt
atcactgatctgtgtttcagtgaggatggaaaatggctgatctcgtcaagtatggatggg
acactcagaatatgggatatcagtttagcaagacagatagatgcgatgcatgttgatgta
tctataacatctgtctcgatgtctcctaatatggatgtgctggcaactacccatgttgat
caaaatggcgtgtatctttggatcaatcaagctttgttctcaccctcaacaaatgttgat
agctatgcaagtggtaaacatgtccggaatgtgcttttgccaactgtttcatctgctgaa
agatctgaggaagaagaatccattcaaaattctcaagatgcgaatcaatctaacattaaa
ccttttgtcataacgaatcatcaaataccaaatatgatcacactgtcattgctcccaagg
agtcaatggcaaagtttgacaaatcttgacattataaaggttcgaaacaagccggttgag
ccacctaagaagcccgagaaggcgccttttttcttgccctcagttccatccctttctggg
gatatattgtttgacccccctgccagtaaagaaacagatgacagcactaccgatggcact
agtcataaaacgatggctgatctctcctcacacttctgtcaacttttgcaatcatgtggg
gaacttcaaaactattcagcgtttactgactacctaaaaggcctatccccgtcatctcta
gacatggaactacgaatgctacagataatagatgacgatgacgatgacgacgacgacgac
gagatggaagatgaggaggaaccaaggcctgagcttgaatccatttcactgctgttggac
tacttcattcatgagctttcctgcaggaacaacttcgagtttgttcaagctgttctgaaa
ttgtttctgaagatacatggcgagacaatacggcgccactcaatgcttcaggacaaagtg
aagaaaattctagatgtccagagcttagtttggcagaagattgacaagatgtttcagagc
acacggtgcatggtcacattcctcagcaactcacagttttag
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