Lolium rigidum (rigid ryegrass): 124702331
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Entry
124702331 CDS
T09103
Name
(RefSeq) phytochrome B-like
KO
K12121
phytochrome B
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
124702331
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_3
PAS_8
Motif
Other DBs
NCBI-GeneID:
124702331
NCBI-ProteinID:
XP_047090416
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All DBs
Position
3:complement(130719158..130728169)
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AA seq
1173 aa
AA seq
DB search
MASGSRATPTPTRSPSSARPAPPHQHHTQSSGGSTSRAGGGGGGGGGGGAAGSAAATESV
SKAVAQYTLDAGLHAVFEQSGASGRSFDYSQSLLAPPTPSSEQQIAAYLSRIQRGGHIQP
FGCTLAVADDSSFRLLAYSENAADLLDLSPHHSVPSLDSSAAPSPVSLGSDARLLFIPSS
GVLLERAFAAREISLLNPLWIHARVTNRPFYAILHRIDVGVVIDLEPARTEDPAVSIAGA
VQSQKLAVRAISRLQALPGGDVRLLCDTVVEHVRELTGYDRVMVYKFHDDEHGEVLAESR
RADLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPAMPQPLCLVGSTL
RSPHGCHAQYMANMGSIASLVMAVIISSGGEDEHNMGRGAVPSAMKLWGLVVCHHTSPRC
IPFPLRYACEFLMQAFGLQLNMELQLAHQMSEKHILRTQTLLCDMLLRDSPTGIVTQSPS
TMDLVKCDGAALYYHGKYYPLGITPTEAQIKDIIKWLTVCHGDSTGLSTDSLADAGYPGA
TELGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFL
EVVKSRSLPWENAEMDAIHSLQLILRDSFRDAGEGTSNSKAIVNGHVQLGELELRGIDEL
SSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLTVEEAMGKSLVKDLIFSESE
EIVEKLLSQALRGEEEKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQD
ITGQKVVMDKFVNIQGDYKSIVHNPNPLIPPIFASDENICCSEWNTAMEKLTGWSKGEVV
GKLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDSEKLPFSFFDKNGKYVQALLTANT
RNKIDGETIGAFCFLQIASPELQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFT
NSLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLDKGEFSLGNVMNAV
VSQVMILLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLSDFLLSMVRFAPAENGWVEIQ
VRPNVKQNSDGTETMLFLFRFACPGEGLPPDIVQDMFSKARWTTQEGIGLSVCRKILKLM
GGDVQYIRESERSFFLIVLELPQPRRSESRDRN
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggcagccgcgccacgcccacgcctacgcgctccccgtcctccgcgcgtccc
gctccgccgcaccaacaccacacgcagtcctcgggcgggagcacgtcccgcgccggaggg
ggagggggcggaggaggagggggaggcgcggccgggagcgctgccgccacggagtccgtc
tccaaggccgtggcgcagtacaccctcgacgccggcctccacgccgtgttcgagcagtcg
ggcgcgtcggggcgcagcttcgactactcccagtcgctgctcgcgccgcccactccctcc
tccgagcagcagatcgccgcctacctctcccgcatccagcgcggcggccacatccagccc
ttcggctgcacgctcgccgtcgccgacgactcctccttccgcctcctcgcctactccgag
aacgccgccgacctgctcgacctgtcgccccaccactccgtcccgtcgctcgactcctcc
gccgcgccctcccccgtctccctcggctccgacgcgcgcctcctcttcatcccctcctcc
ggcgtcctcctcgagcgcgccttcgccgcccgcgagatctcgctgctcaacccgctctgg
atccacgccagggtcaccaacaggcccttctacgccatcctccaccgcatcgacgtcggc
gtcgtcatcgacctcgagcccgcccgcaccgaggaccccgctgtctccatagctggcgcc
gtccagtcccagaagctcgccgtccgcgccatctcccgcctccaggcgctccctggcggg
gacgtcaggctcctctgcgacaccgtggtcgagcacgtccgcgagctcaccggctatgac
cgcgtcatggtctacaaattccacgatgacgagcacggggaagtcctcgccgagagccgc
cgtgccgacctcgagccgtacctcggtttgcattatcctgccactgacatcccgcaggca
tcgcgctttctcttcaggcaaaaccgcgtgcggatgattgctgattgccacgcagctccg
gtgagggtcatccaggaccctgcaatgccgcagccactctgcttggttggctccactctg
cgctccccgcacgggtgccatgcgcagtacatggcaaacatggggtccattgcatccctc
gtcatggcagtgatcatcagtagtggcggcgaggatgagcacaacatggggcggggcgct
gtgccgtcggcgatgaagctgtgggggttggtcgtgtgccaccacacatctccgaggtgc
atccctttcccgctgcggtatgcatgcgagttcctcatgcaggcctttggcctgcagctc
aacatggagctgcagcttgcacatcaaatgtcagagaaacacattcttagaacacagacg
ctgctgtgtgacatgctactcagggattcaccaactggaattgtcacacagagcccaagc
acaatggaccttgtcaagtgtgatggtgctgcgctctactaccacgggaagtactaccca
cttggtatcactccaacggaagctcagattaaggacatcatcaagtggttgacagtttgc
cacggagactcgacagggctcagcacagatagcctggctgatgcaggataccctggtgct
actgaattaggggatgcagtgtgcggaatggcagtagcttatatcacgccgagcgattat
ttgttttggttccggtcacacacggccaaggagataaaatggggcggtgcaaagcatcat
ccggaggataaggatgatgggcagcgaatgcacccacggtcatcattcaaggcattcctt
gaagtggtgaagagtaggagcttaccttgggagaatgctgagatggatgcaatacattcg
ctgcagctcatattgcgggactccttcagagatgcaggagagggcactagtaactcaaaa
gccattgtcaatggtcacgtccagcttggggaactagagttgcggggaatagatgagctg
agctcggtagcaagggagatggttcggttgatcgagacggctacagtacccatctttgca
gttgatactgatggatgtataaatggatggaatgcaaaagttgctgagctgaccggcctc
acagttgaggaagccatgggaaaatcattagtaaaagatcttatctttagtgaatctgag
gaaatagttgagaagctactctcacaagctttaagaggcgaggaagaaaaaaatgtggag
ataaagctaaagacatttgggccggagcaatctaaaggaccgatttttgttattgttaac
gcctgctctagtagggattacactaaaaatattgttggggtttgtttcgttggccaagat
atcacagggcaaaaggtggtcatggataaatttgtcaacatacaaggggattacaagtct
attgtacacaaccccaatcctctaatacccccgatatttgcttcagatgagaatatttgt
tgctctgaatggaacacggcaatggaaaaactcacgggctggtcaaaaggagaagttgtt
ggtaagcttctggttggggaggtatttggaaattgttgccgactcaagggcccagatgca
ttgacaaagttcatgattgtccttcacaatgctataggagggcaggattctgagaagctc
cccttttcatttttcgacaagaatggcaaatatgtacaggccttattgactgcaaacaca
aggaacaaaatagatggtgagaccataggtgccttttgcttcttgcagattgcaagccct
gagttacagcaagcctttgagattcagagacaacaagaaaagaagtgctatgccaggatg
aaggagttggcttacatttgccaggagataaaaaaccctctcagcggtatccgatttaca
aactcccttttagagatgactgatttaaaggatgaccagaggcagtttcttgaaactagc
actgcttgtgaaaaacagatgtccaagattgtaaaggatgccagcctccaaagtattgag
gacggctctttagtgctggacaaaggtgaattttcacttggaaatgttatgaatgctgtt
gtcagccaagtgatgatattgctgagagaaagagatttacaacttattcgagatatccct
gatgaaatcaaagaagcctcggcatatggtgaccaatatagaatccagcaagttttgtct
gactttttgctaagcatggtgcggtttgctccagctgaaaacggctgggtagagatacaa
gtcagaccaaacgtaaaacagaattctgatggaacagaaacaatgctcttcctcttcaga
tttgcctgtcctggtgagggcctccccccagacattgtccaagacatgttcagcaaggcc
cgctggacaacccaagaaggcattgggctaagcgtgtgcaggaaaatcctcaaattgatg
ggtggcgatgttcagtacatcagggagtcagagcggagtttcttcctcatcgtgctcgag
ctaccccagccccgccgatcagaaagtagggatcggaactga
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