Lolium rigidum (rigid ryegrass): 124702336
Help
Entry
124702336 CDS
T09103
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
124702336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_3
PAS_8
Motif
Other DBs
NCBI-GeneID:
124702336
NCBI-ProteinID:
XP_047090420
LinkDB
All DBs
Position
3:130877043..130885333
Genome browser
AA seq
1174 aa
AA seq
DB search
MASGSRATPTPTRSPSSARPAPPHQHHTQSSGGSTSRAGGGGGGGGGGGGAAGSAAATES
VSKAVAQYTLDAGLHAVFEQSGASGRSFDYSQSLLAPPTPSSEQQIAAYLSRIQRGGHIQ
PFGCTLAVADDSSFRLLAYSENAADLLDLSPHHSVPSLDSSAAPSPVSLGSDARLLFIPS
SGVLLERAFAAREISLLNPLWIHARVTNRPFYAILHRIDVGVVIDLEPARTEDPAVSIAG
AVQSQKLAVRAISRLQALPGGDVRLLCDTVVEHVRELTGYDRVMVYKFHDDEHGEVLAES
RRADLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPAMPQPLCLVGST
LRSPHGCHAQYMANMGSIASLVMAVIISSGGEDEHNMGRGAVPSAMKLWGLVVCHHTSPR
CIPFPLRYACEFLMQAFGLQLNMELQLAHQMSEKHILRTQTLLCDMLLRDSPTGIVTQSP
SIMDLVKCDGAALYYHGKYYPLGITPTEAQIKDIIKWLTVCHGDSTGLSTDSLADAGYPG
ATELGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAF
LEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAGEGTSNSKAIVNGHVQLGELELRGIDE
LSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLTVEEAMGKSLVKDLIFSES
EEIVEKLLSQALRGEEEKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQ
DITGQKVVMDKFVNIQGDYKAIVHNPNPLIPPIFASDENICCSEWNTAMEKLTGWSKGEV
VGKLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDSEKLPFSFFDKNGKYVQALLTAN
TRNKMDGETIGAFCFLQIASPELQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRF
TNSLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLDKGEFSLGNVMNA
VVSQVMILLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLSDFLLSMVRFAPTENGWVEI
QVRPNVKQNSDGTETMLFLFRFACPGEGLPPDIVQDMFSKARWTTQEGIGLSVCRKILKL
MGGDVQYIRESERSFFLIVLELPQPRRSESRDRN
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggcagccgcgccacgcccacgcccacgcgctccccgtcctccgcccgtccc
gctccgccgcaccaacaccacacgcagtcctcgggcgggagcacctcccgcgccggaggg
ggaggcggcggaggaggaggagggggaggcgcggccgggagcgctgccgccacggagtcc
gtctccaaggccgtggcgcagtacaccctcgacgccggcctccacgcggtgttcgagcag
tcgggcgcgtcggggcgcagcttcgactactcccagtcgctgctcgcgccgcccactccc
tcctccgagcagcagatcgccgcctacctctcccgcatccagcgcggcggccacatccag
cccttcggctgcacgctcgccgtcgccgacgactcctccttccgcctcctcgcctactcc
gagaacgccgccgacctgctcgacctgtcgccccaccactccgtcccgtcgctcgactcc
tccgccgcgccctcccccgtctccctcggctccgacgcgcgcctcctcttcatcccctcc
tccggcgtcctcctcgagcgcgccttcgcggcccgcgagatctcgctgctcaacccgctc
tggatccacgccagggtcaccaacaggcccttctacgccatcctccaccgcatcgacgtc
ggcgtcgtcatcgacctcgagcccgcccgcaccgaggaccccgccgtctccatagctggc
gccgtccagtcccagaagctcgccgtccgcgccatctcccgcctccaggcgctccctggc
ggggacgtcaggctcctctgcgacaccgtcgtcgagcacgtccgcgagctcacgggctat
gaccgcgtcatggtctacaaattccacgacgacgagcacggggaagtcctcgccgagagc
cgccgggctgacctcgagccgtacctcggtttgcattaccctgccactgacatcccgcag
gcatcgcgctttctcttcaggcaaaaccgcgtaaggatgattgctgattgccacgctgct
ccggtgagggtcatccaggaccctgcaatgccgcagccattgtgcttggttggctccact
ctgcgctccccgcacgggtgccacgcgcagtacatggcaaacatggggtccattgcatcc
ctcgtcatggcagtcatcatcagtagtggcggggaggatgagcacaacatggggcggggc
gctgtgccgtcggcgatgaagctgtgggggttggtcgtgtgccaccacacatctccgcgc
tgcatccctttcccgctgcggtatgcgtgcgagttcctcatgcaggcctttggcctgcag
ctcaacatggagctgcagcttgcacatcaaatgtcagagaaacacattcttagaacacag
acgctgctgtgtgacatgctactcagggattcaccaactggcattgtcacgcagagccca
agcataatggaccttgtcaagtgtgatggtgctgcactgtactaccacgggaagtactac
ccacttggtatcactcccacggaagctcagattaaggacatcatcaagtggttgacggtt
tgccatggagactcgacagggctcagcacagatagcctggctgatgcaggctaccctggt
gctactgaattaggggatgcagtgtgcggaatggcagtagcttatatcacgccgagcgat
tatttgttttggttccggtcacacacggccaaggagataaaatggggtggtgcaaagcat
catcccgaggataaggatgatggtcagcgaatgcacccacggtcatcattcaaggcattc
cttgaagtggtgaaaagtaggagtttaccttgggagaatgctgagatggacgcaatacat
tcgctgcagctcatattgcgggactccttcagagatgcaggagagggcactagtaactca
aaagccatcgtcaatggtcacgttcagcttggggaactagagttgcgaggaatagatgag
ctgagctcggtagcaagggagatggttcggttgatcgagacagccacagtgcccatcttt
gcagttgatactgatggatgtataaatggatggaatgcaaaagttgctgagctgactggc
ctcacagttgaggaagcgatgggaaaatcattagtaaaagatcttatctttagtgaatct
gaggaaatagttgagaagctactctcacaagctttaagaggcgaggaagaaaaaaatgtg
gagataaagttaaagacatttgggccggagcaatctaaaggaccgatttttgttattgtt
aacgcctgctctagtagggattacactaaaaatattgttggggtttgtttcgttggccaa
gatatcacagggcaaaaggtggtcatggataaatttgtcaacatacaaggggattacaag
gctattgtacacaaccccaatcctttaatacccccgatatttgcttcagatgagaatatt
tgttgctctgaatggaacacggcaatggaaaaactcacgggttggtcaaaaggagaagtt
gttggtaagcttctggtcggggaggtatttggaaattgttgccgactcaagggcccagat
gcattgacaaagttcatgattgtccttcacaatgcgataggagggcaggattctgagaag
ctccccttttcatttttcgacaagaatggcaaatatgtacaggccttattgactgcaaac
acaaggaacaaaatggatggtgagaccataggcgccttttgcttcttgcagattgcaagc
cccgagttacagcaagcctttgagattcagagacaacaagaaaagaagtgctatgccagg
atgaaggagttggcttacatttgccaggagataaaaaaccctctcagcggtatccggttt
acaaactcccttttagagatgactgatttaaaggatgaccagaggcagtttcttgaaact
agcactgcttgtgaaaagcagatgtccaagattgtaaaggatgccagcctccaaagtatt
gaggacggctctttagtgctggacaaaggtgaattttcacttggaaatgttatgaatgct
gttgtcagccaagtgatgatattgctgagagaaagagatttacaacttattcgagatatc
cccgatgaaatcaaagaagcctcggcatatggtgaccaatatagaatccagcaagttttg
tctgactttttgctaagcatggtgcggtttgctccaactgaaaacggctgggtagagata
caagtcagaccaaacgtaaaacagaattctgatggaacagaaacaatgctcttcctcttc
agatttgcctgtcctggtgagggcctccccccagacattgtccaagacatgttcagcaag
gcccgttggacaacccaagaaggcattgggctaagcgtgtgcaggaaaatcctcaaattg
atgggtggcgatgttcagtacatcagggagtcagagcggagtttcttcctcatcgtgctc
gagctaccccagccccgccgatcagaaagtagggatcggaactga
DBGET
integrated database retrieval system
