Lolium rigidum (rigid ryegrass): 124702350
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Entry
124702350 CDS
T09103
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124702350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124702350
03009 Ribosome biogenesis [BR:
lrd03009
]
124702350
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124702350
Spliceosome [BR:
lrd03041
]
Complex A
U2 snRNP components
U2 related factors
124702350
Complex B
124702350
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124702350
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
90S particles
Helicases
124702350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
T2SSE
Flavi_DEAD
AAA_30
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
124702350
NCBI-ProteinID:
XP_047090434
LinkDB
All DBs
Position
3:131994695..131998119
Genome browser
AA seq
719 aa
AA seq
DB search
MGTERKRKVSLFDVVDQTSVSAKLGRAGINGAAAAANPSINPWNGRPYSARYFEILEKRR
TLPVWQQKDDFLRVLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSTRSMVACTQPRRVA
AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSNKTVLKYLTDGMLLREAMADPLLERYKVI
VLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSSAPLMKVPGRLH
PVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEVNNMGD
QVGPVKVVPLYSTLPPAMQQKIFDAAPPPLREGGPAGRKIVVSTNIAETSLTIDGIVYVI
DPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFSGDLQEQ
TYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTP
LGEMMSEFPLDPQMSKMLVISPKYNCSNEILSVSAMLSVPNCFLRPREAQKAADEAKARF
GHIDGDHLTLLNVYHAYKQNNEDPTWCYENFVNARAMKSADNVRQQLVRIMTRFNLKMCS
TDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVIYN
EYVLTTRNFIRTVTDIRGEWLVDIAPQYYDLTNFPSCEAKRVLERLHNKRERERAANRS
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcgcaaggtcagcctcttcgacgtggtcgaccagacctccgtg
tccgccaagctcggccgcgccggaatcaacggcgccgccgccgccgccaatccgtccatc
aacccctggaacggccggccctattccgcgcgctacttcgagatcctcgagaagcgccgc
acgctccccgtgtggcagcagaaggacgacttcctccgcgtcctccgcgacaaccagacc
ctcatcctcgtcggagaaaccgggagtggcaagaccacccagattccccaattcgtgctc
gaggcggaaggtctgagcacccgctccatggtggcctgcacgcagccgcggagggtcgcg
gcaatgtcggtctcccggcgtgtcgcagaggagatggacgtcacgatcggggaggaggtt
ggttacagcatccggttcgaagactgcagcagcaacaaaaccgttctcaaatatttgaca
gatggtatgcttctgagggaagcaatggcagacccgctcttagagaggtacaaggtgatt
gtgctcgatgaggctcacgagcgcacgttggcaacggacgttctctttggccttctcaag
gaggttctaaagaacaggcctgacttgaagctcgttgttatgagtgctacccttgaggca
gagaaattccagggttattttagcagtgcaccattgatgaaggttcccggtaggcttcac
ccggtcgagatcttctatacgcaagagccagaaagggactatctggaagctgctatcagg
actgttgtgcagatacatatgtgtgaacctgctggtgatatccttgtgttccttactggc
gaagaggagattgaggatgcctgccggaaaattaacaaggaagttaataacatgggggat
caggttggcccagttaaagtcgtaccattgtactctactctaccccctgcaatgcagcag
aagatttttgacgctgctccacctccattgagagagggaggccctgctggaaggaaaatt
gttgtgtccacaaacattgctgagacatccttgaccatcgacggtatagtgtatgttata
gatccagggttttccaaacagaaggtttacaatccaaggataagggtggagtcccttctg
gtgtccccaatttccaaggctagtgcgcatcagagagctggtcgtgccggtagaacgcag
cctgggaagtgcttcaggttgtacacagagaagagttttagcggggatttacaggagcag
acctacccagaaattcttaggtcaaacctggcaaatacagttctgacactgaagaagctt
ggaattgacgatttagtgcattttgacttcatggatcctcctgcaccagaaactctaatg
agggccttagaagttctgaactacttgggagcactcgatgatgaaggcaacctgacacct
cttggtgaaatgatgagtgagttccccttggacccccagatgtcaaagatgcttgtcatc
agtccaaagtacaactgttcaaatgagatcctctcggtatctgccatgctctcagtaccc
aattgctttctccggcctagggaggcacagaaggctgctgatgaggcgaaggctcgattt
gggcacattgatggggatcatttgacacttctgaatgtgtaccatgcatacaagcagaac
aatgaggatcctacatggtgttacgagaattttgtcaatgcccgagcgatgaagtctgct
gataatgttaggcaacagcttgttcgcatcatgaccagattcaacctcaagatgtgcagt
acagacttcaacagccgcgagtactatgtcaatatcaggaaagcaatgctttcagggtac
tttatgcaggttgctcatcttgagcgaactgggcattacttgactgttaaggataatcag
gttgtccatcttcatccctcgaattgcatggaccacaagccagagtgggtcatctacaat
gaatatgttttgaccacaaggaatttcatccgcacagtcaccgatatccgtggagaatgg
ctggtcgatatagctccacagtattatgatctgaccaatttcccatcatgtgaggcgaaa
cgtgtccttgagaggctacataacaagcgtgagagggaaagagctgccaacagaagctga
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