Lolium rigidum (rigid ryegrass): 124702600
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Entry
124702600 CDS
T09103
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124702600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124702600
Spliceosome [BR:
lrd03041
]
Complex C
Other components
Step II factors
124702600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_SCAP
Beta-prop_WDR75_2nd
DExH14_plug
Motif
Other DBs
NCBI-GeneID:
124702600
NCBI-ProteinID:
XP_047090718
LinkDB
All DBs
Position
3:160166983..160170045
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AA seq
566 aa
AA seq
DB search
MDLLQSYSPGDASSPEDESLSSPDSSPLRLPTKSAAPAVDETALALSVAASTSRPLDPSV
HLVPFNPTADQLWAPVLGPQHPHAPISSASGHRNHKLGHVEDAALLPFLFDEQYNTFHRF
GYASDPSGLQIIGDAQAANPDTVYNLPPSEHKRRRIQSKEDNQEPVPPEADNPAADEWVV
HNKKSPWAGVREGPPVELTDEQKQYAEAHAAKKAEKEARGEGKEKTEVVAKTTFHGKEEK
DYQGRSWITPPKDAKAANERCYIPKRCVHEWVGHTKGVSAIRFFPKYGHLLLSASMDCKI
KIWDVLESKTCMRTYMGHNKAVRDISFCSDGSKFLSAGYDRNIQYWDTETGQVISTFSTG
KVPYVVKLNPDEDKQNILLAGMSDKKIVQWDMRSGEITQEYDQHLGAVNTITFVDNNRRF
VTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSIAVHPNSNWLAAQSLDNQILIYSTKER
FQLNKKKRFAGHIVAGYACQVSFSPDGRFVMSGDGEGSCWFWDWKSCRRFKTLKCHNGVC
IGCEWHPLETSKVATCGWDGVIKYWD
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggatctcctccagtcctactctccaggcgacgcatcgtcgccggaggacgagtcgctc
tcctcgccggactcctccccactccgcctccccaccaagtccgccgcccccgccgtcgac
gagaccgcgctcgcgctgtccgtcgccgcctccacctcccgcccgctcgacccctcggtc
cacctcgtccccttcaaccccaccgccgaccagctctgggcgcccgtcctcgggccccag
cacccgcacgcgcccatctcgtccgcctccggccaccgcaaccacaagctcggccacgtc
gaggacgccgcgctgctccccttcctcttcgacgagcagtacaacaccttccaccgcttc
ggctacgcctccgacccctcgggcctccagatcatcggcgacgcgcaggccgccaacccc
gacaccgtctacaacctgcccccctccgagcacaagcgccgccgcatccagtccaaggag
gacaaccaggagcccgtgcccccggaggccgacaaccccgcagccgacgagtgggtcgtc
cacaacaagaagagcccctgggccggcgttcgggagggcccgcccgtggagctcacggac
gagcagaagcagtacgcggaggcgcatgccgccaagaaggccgagaaggaggcgcgcggc
gaagggaaggagaagacggaggtggtggccaagaccaccttccacgggaaggaggagaag
gactaccagggacgatcgtggatcactccgcccaaggacgccaaggcggccaacgaacgc
tgctatattcccaagaggtgtgtgcacgagtgggttgggcacaccaagggggtctcagcc
atcagatttttcccaaagtatggccatctgctgctgtctgctagtatggattgcaagatt
aaaatctgggatgtgctcgagtccaagacgtgtatgcggacctacatggggcacaacaag
gcggtgagggatatatcgttctgcagcgacggcagcaagttcttgagcgctgggtatgac
aggaatattcagtactgggatacggagactgggcaggtgatatccaccttctctaccggg
aaggtcccttatgtcgtgaagctcaatcctgatgaagataagcagaatattctcctcgct
gggatgagtgacaagaagattgtgcagtgggatatgaggtcaggggagatcacgcaagag
tatgatcagcatttgggggcggtcaacaccatcacttttgtagataataataggaggttt
gtgacctctagcgacgacaagtcgcttcgcgtgtgggagtatggtatccccgtggtgatt
aagtatatcagtgagccacacatgcactccatgccgtctattgctgtacaccccaactca
aactggctggcagcgcagagcttggataaccagattctgatatacagcaccaaggaaagg
tttcaacttaataagaagaagaggtttgcgggccacattgtggcaggttatgcttgtcag
gtgagcttctcacctgatggcaggtttgtcatgtcaggagatggtgaaggtagttgctgg
ttctgggactggaaaagctgcaggagattcaagaccctcaagtgccacaatggagtttgc
attgggtgtgagtggcatccactggagactagcaaggttgcaacctgtggatgggatggc
gtaatcaaatactgggattaa
DBGET
integrated database retrieval system