Lolium rigidum (rigid ryegrass): 124702894
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Entry
124702894 CDS
T09103
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03030
DNA replication
lrd03410
Base excision repair
lrd03420
Nucleotide excision repair
lrd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124702894
03410 Base excision repair
124702894
03420 Nucleotide excision repair
124702894
03430 Mismatch repair
124702894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrd03032
]
124702894
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124702894
DNA replication proteins [BR:
lrd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124702894
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124702894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA_lid_RFC1
AAA
Rad17
AAA_22
AAA_30
RCF1-5-like_lid
AAA_19
RuvB_N
nSTAND3
AAA_assoc_2
AAA_5
AAA_16
AAA_18
Gp44_lid
AAA_24
AAA_14
Zeta_toxin
AAA_2
Sigma54_activ_2
PTCB-BRCT
BRCT_2
NTPase_1
RNA_helicase
AAA_17
Mg_chelatase
RsgA_GTPase
TsaE
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
124702894
NCBI-ProteinID:
XP_047091021
LinkDB
All DBs
Position
3:200733514..200744328
Genome browser
AA seq
1046 aa
AA seq
DB search
MSSDIRKWFMKPHDKNAGAAKPSGTGTGAAAAKKPVLSIPEKPAPSSVSGSQDASARRKT
SKYFAPKTEKDSDVTDKSLPKRKLHKSSDQLEDDSKPLAANRVLKAEEEDDDDDFVAPSK
RKTPVKPPPSKKLKAASNDDDEDERMDEDAKTPSKAAGRGRGRGRGGRGAVHAKTATPDD
DVGGGEDRMDEDAKTPSKSTGRGRGRGRGGRGGGTAHGKTTGLDDDAEEDRMDEDDKTPS
KAAGRGRGGRGAGSTPGGRGRGGGGRGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVI
SGTLDSLEREEAGDVIKRYGGRVTGSISKRTNYLLADEDVGGVKSNKAKDLGVPFLTEDG
LFDMIRKSKPAKAPANKHENNSNSEKLQKSQTKSSPVKVEKRAVEQVSTMDKSIASKSEI
ASTNNQKAKVVDRGSLQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWEEQFLHPGQKGKG
KKQTDGGAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGS
TSNSIKELISNATLNYSDNRTKKPKAVLIMDEVDGMSAGDRGGVADLIASIKISKIPIVC
ICNDRFSQKLKSLVNYCLLLNFRKPTKQQMGKRLMEIARKEGIQAQENAMEELAERVHGD
IRMALNHLQYMSLSQSVVKYDDIRLRLNSSAKDEDISPFTAVDKLFGFNGGRLRMDERMD
LSMSDPDLVPLIIQENYINYRPSAVGKDDSGVKRMNYLARAAESLADGDIVNVQIRRYRQ
WQLSQAACFASSIVPAALMHGNREVLEAGERNFNRFGGWLGKYSTTNKNKRLMEDVHSHI
LASQQANVDREALRLDYLTLLLRQLTGPLKTMPKDEAVQKVVEFMDTYCLTQEDFDTLVE
LSKFKGHPNPMDGIQPAVKSALTKAYKQGSSCRVIRSADQINIPGMKKTLKKRVAAILEP
LDESLPEENGVASAEGDEDEASDAENDDELAAGDSKPTLDLQSDKKKGIQVQLDLKTNGN
GSSAKKAPAKSKASGSAGGSAGKRKR
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggacatcaggaaatggttcatgaagccgcacgacaagaatgctggtgcggcc
aagccatccggcaccggtactggcgccgccgcggccaagaagcccgtgctcagcattcca
gagaagcccgcgccatcttcggtgtctggcagtcaagatgcttcagctagaaggaagaca
agcaagtacttcgcacccaaaacagaaaaagattcagatgttaccgacaagagtttgcct
aaaagaaaacttcacaaaagcagcgaccaacttgaggatgacagcaagcctttggcagca
aacagagtccttaaggctgaagaagaagacgacgacgatgactttgtggcgccttccaaa
aggaaaacccctgtgaagccaccaccatcaaagaagttgaaggctgcatctaatgatgat
gacgaggatgaaaggatggatgaagatgccaagaccccttccaaagcagctggaagggga
agagggaggggaaggggaggaagaggagcagtccatgcaaagactgctactcctgatgat
gatgttggtggtggggaggacaggatggatgaagatgctaagactccctccaaatcaact
ggaaggggaagaggaaggggaaggggtggaagaggcggaggaacagctcatggaaagact
actggtcttgatgatgatgctgaggaggacaggatggatgaagatgataagaccccttcc
aaagcagctggaaggggaaggggaggaagaggagcaggatctactcctgggggaagaggg
agaggagggggtgggagaggtttcatgaattttggtgaaaggaaggatcctcctcacaaa
ggggagaaggaagtcccagagggtgcccctgactgtttagctggtctgacatttgtcata
agtggcactcttgacagtcttgaacgggaggaagcaggtgatgtaataaagcgttatggc
ggccgtgtgactggctctattagtaaaaggacgaattacctgttggctgatgaagacgtt
ggtggtgtgaaatctaacaaagcaaaagatctgggggtcccattcttgactgaagatggt
ttatttgatatgatccggaaatcaaagcctgcaaaggctcctgcaaacaaacatgaaaat
aacagcaactctgaaaagctacagaaatcacagacgaagagctctccagttaaagttgaa
aaaagagctgttgagcaagtcagtaccatggacaagagtattgcatcaaagagtgaaatt
gcttccactaacaaccaaaaggccaaggttgttgaccgtggttctttgcaatggacagaa
aaatatcggccaaaagttccgaacgacatagtaggcaaccaatcaatggttaaacaactt
catgattggttgaaaagttgggaggaacaattccttcatcctggccaaaagggtaaagga
aagaagcaaaccgatggtggagctaaaaaggctgtattgctgagtggacctccaggtatt
ggtaagaccacaactgcaaaagttgtcagtcagatgcttggattgcaggccattgaggtt
aatgcaagtgatagccgcggtaaagcagactccaagatcgagaaaggtgttggggggagc
acatcaaattctatcaaagagcttatcagcaatgccactctcaattatagtgacaaccgg
acaaagaagcctaaggctgtactaatcatggatgaagttgacggtatgtctgctggcgat
aggggtggagttgctgatcttattgccagcatcaagatatccaagattcctatagtttgc
atttgcaatgaccgttttagccagaaattgaagagccttgtaaattactgtttgctactc
aacttcaggaaaccaacaaagcaacagatgggtaagaggttgatggagattgccagaaag
gaaggtattcaagctcaagagaatgcgatggaagagcttgcagaaagagtacatggagat
attcgcatggcactcaaccatttgcaatacatgagtctctcacagtctgtggtcaaatat
gatgatataagattacgccttaatagtagtgccaaagatgaagatatctctccattcacg
gctgtggacaagctgttcggtttcaatggtgggagactaaggatggatgagagaatggat
ttgagcatgagcgatcctgatttagttcccttgattatacaggaaaattatataaattat
cggcctagcgctgtggggaaggatgacagtggagttaaaagaatgaactatcttgcccgt
gccgctgagtctctagcagacggtgatattgttaatgtacaaataagaagatatcggcag
tggcagctgtcccaagctgcttgttttgcttcatctatagtacctgcagctttgatgcat
ggaaatagagaagtccttgaagcaggtgaacggaactttaataggtttggtggatggttg
ggcaagtactcaactaccaacaaaaacaaaagactaatggaagatgtccatagtcatatt
cttgcatcgcagcaagcaaatgtggacagggaggcgttgaggctggattatctcactctt
ctcttgagacaattgactggcccactgaagacaatgcctaaggatgaagctgtccaaaaa
gtggtggagtttatggatacttactgtttaacccaggaagactttgacacacttgttgaa
ttatccaaatttaagggtcatccaaatcctatggatggtattcaaccagctgttaaaagt
gccttgacgaaggcttacaaacaaggaagtagttgtcgtgttattcgatcagcagatcaa
ataaatatcccaggcatgaaaaaaacattaaagaaacgagtagcagcaatcttggagcca
ttggatgagagtttgcctgaagaaaatggagtagcatcagctgaaggtgatgaagacgaa
gcttctgatgctgaaaatgatgatgaacttgctgctggtgactcgaagccgacactggac
ctgcagagtgataagaagaaaggaattcaagtgcagctggacctgaagaccaatggcaac
gggtcaagtgcaaagaaggcgccagcaaaatcaaaagcttcagggtctgcaggaggctca
gccgggaagagaaagaggtag
DBGET
integrated database retrieval system
