Lolium rigidum (rigid ryegrass): 124702952
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Entry
124702952 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124702952
03041 Spliceosome [BR:
lrd03041
]
124702952
03036 Chromosome and associated proteins [BR:
lrd03036
]
124702952
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124702952
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124702952
mRNA cycle factors
Common to processing body (P body) and stress granule
124702952
Spliceosome [BR:
lrd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124702952
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124702952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
124702952
NCBI-ProteinID:
XP_047091091
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All DBs
Position
3:210390774..210395194
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AA seq
610 aa
AA seq
DB search
MAAPSRTSWADVADAEPAPPAPAPAPAAAPAASNGPARADRSSYVPPHLRNRSSAAPPPA
SSAPPPRAAPGLLGRPAPAAGGRFAASGPPPRRWDREPNPFGNEEEAAPEPVPFDEHQNT
GINFDAYEDIPVETSGREVPPAVGTFAEIDLGAALNDNIRRCKYVRPTPVQRHAIPISLA
GRDLMACAQTGSGKTAAFCFPIISGIMRGPPVQRPQRSGSRTACPLALILSPTRELSMQI
HEEAKKFSYQTGVRVVVAYGGAPITQQLRDLERGVDILVATPGRLVDLLERARVSLQSIR
YLALDEADRMLDMGFEPQVRRIVEQMDMPPRGVRQTLLFSATFPGEIQRMASDFLENYIF
LAVGRVGSSTELIAQRVEFVQEADKRSHLMDLLHAQRDSADQAKQALTLVFVETKRGADS
LENWLCTNGFPATSIHGDRNQQEREYALRSFKSGQTPILVATDVAARGLDIPHVAHVVNF
DLPNDIDDYVHRIGRTGRAGKSGLATAFFNDNNSSMAKSLADLMTESNQEVPAWLIRYAA
RPSYGSSSGGRNRRGGGGASRFGGRDFRKESSSFGKGGGADYGGSSGGYGGSSTYGGGGY
GGAGAPSAWD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggcggccccctcccgcacctcctgggccgacgtcgccgacgccgagccagcccctccc
gctcccgcgcccgctccggcggccgcgcccgccgcatccaacggccccgcgcgcgccgac
cgctcctcctacgtccctccccacctccgcaaccgctcctccgcggcgccgcctcccgcg
tcctccgctccacccccgcgcgccgcgccaggcctcctcggccgccccgctcccgccgcc
ggggggaggtttgcggccagcggccccccgcctcgcaggtgggaccgggagcccaacccc
ttcggcaacgaggaggaggcggcgccggagcccgtgcccttcgacgagcaccagaacacc
gggatcaacttcgacgcctacgaggacatccccgtcgagaccagcggccgggaggtgccg
ccagccgtcggcaccttcgccgagatcgacctcggcgccgcgctcaacgacaacatccgc
cgctgcaagtacgtgcgccccacccccgtgcagcgccacgccatcccgatctcgctcgcc
ggccgcgacctcatggcctgcgcgcagacggggtccgggaagacggccgccttctgcttc
cctatcatcagcggcatcatgcggggtccgcccgtgcagcggccgcagcggagcgggagc
aggaccgcctgcccgctcgctctcatactctcgcccacaagagagctctccatgcagatt
catgaagaggccaagaaattttcataccagactggtgtcagggtagtcgttgcatatggt
ggggcgcctattacccagcagttgcgagatcttgagaggggtgttgacattcttgtggct
actcctggtcgtttggttgatttactggaaagggcaagagtatccttgcagtcaatcaga
taccttgcccttgatgaggcagatagaatgctggacatgggttttgaaccgcaagttagg
agaattgttgagcaaatggacatgcccccacgaggtgtcaggcagacattgttgtttagc
gctacattcccaggagaaatccagagaatggcatctgactttctggagaactacatattc
ctggctgttggaagagtcgggtcgagtactgagttgatcgcccagagagttgagtttgta
caggaggcagataaaagaagtcacctgatggaccttctccatgcacagagagacagtgca
gatcaagcaaagcaagctctcacacttgtcttcgtggaaaccaaaaggggtgcagactcg
ctggagaactggttgtgtacgaatggatttccagctacttctattcatggtgatagaaac
cagcaggaaagagaatatgctttgagatccttcaagagtggccagactccaattctagtt
gcaactgatgtggcggccaggggccttgacattcctcatgttgctcatgttgtgaacttt
gatctccccaacgatatcgatgattacgtacacaggattggtaggacagggagggcagga
aaaagcggtcttgcgacggctttcttcaatgacaacaattcttcaatggcgaagtctcta
gctgacttaatgacagaatctaatcaggaggtacctgcgtggctcattcgctatgcagct
cgcccatcatatggcagcagcagtggtggaaggaacaggcgtggtggtggaggtgcgagt
cgctttggtggccgggacttccggaaggagtcttcatcctttggcaagggtggtggcgcc
gactatggaggcagcagtggtggctatggtggctcctctacatatgggggtggtggctat
ggtggtgctggggctcccagtgcctgggattaa
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