Lolium rigidum (rigid ryegrass): 124703195
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Entry
124703195 CDS
T09103
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124703195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124703195
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124703195
Spliceosome [BR:
lrd03041
]
Complex C
Other components
Step II factors
124703195
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
Sigma54_activ_2
AAA_16
TsaE
ABC_tran
Flavi_DEAD
GIPC1_GH2
SLFN-g3_helicase
PhoH
nSTAND_NTPase5
T2SSE
Motif
Other DBs
NCBI-GeneID:
124703195
NCBI-ProteinID:
XP_047091375
LinkDB
All DBs
Position
3:240508696..240513632
Genome browser
AA seq
1236 aa
AA seq
DB search
MAPAAAPAGPADDGLRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDAPDVSDFD
AKLKANGADLPDYFVRTLLTIIHAILPPPAHNPSSAASHSGAGSSKYRALTRPDDPDRAR
DLRLELERDAAAAAPAPAPARDRPRDDDRSRDRDHDRRRDDRAHHDRSRDRDHGRGRGDR
DRAHDDRGHDRGRDRDSDRGRDRDRDRGRRDRDREGDRDGNWRRDQDRPQERGRDMDRDA
DKEAQGRSRRYGDDKGEQERGGGRNTTNALTNSSGDPELYQVYRGRVTRVMDTGCFVRLE
DVRGGREGLVHVSQMASRRVANAKEVVKRDQEVFVKVVSVKGDKLSLSLRDVDQDTGKDL
LPMQRGAEDAPRTNPSVGTGGALGSGRRLGLSGIVITEEDEVAPISRRPLKRMSSPERWE
AKQLIASGVLDVRDYPQFDEDGDGMLYQEEGAEEELEIELNEDEPEFLQGQSRFSIDMSP
VKIFKNPEGSLSRAAALQTALIKERREVREQEQRAMLDSIPKDLNRPWEDPMPDTGERHL
AQELRGVGLSAYDMPEWKKEAYGKALTFGQRSKLSIQEQRQTLPIYKLKKELIQAVHDNQ
VLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEV
GYAIRFEDCTGPETVIKYMTDGMLLREILVDENLSQYSVVMLDEAHERTIHTDVLFGLLK
QLIKRRSDMRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALI
TVLQIHLTEPEGDILVFLTGQEEIDHACQCLYERMKGLGKDVPELIILPVYSALPSEMQS
KIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKINVYNSKQGLDSLVITPISQA
SAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGSTVLNMKAMGINDLLS
FDFMDPPAPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCS
DEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWC
FENFVQSRSLRRAQDVRKQLLTIMDRYKLDIVAAGKNFTKIRKAITAGFFFHAARKDPQE
GYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFYK
GADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggcgccagcggcggcgccggctggccccgccgacgacgggctccggaagctggagtac
ctatcgctcgtctccaaggtgtgctccgagctcgagacccacatcggcgtcggcgacaag
gtgctggccgagttcatcaccgagctcggccgcgacgcccccgacgtctccgacttcgac
gccaagctcaaggccaacggcgccgacctccccgactacttcgtccgcacgctcctcacc
atcatccacgccatcctcccgccgcccgcccacaaccctagctccgccgcctcccactcc
ggcgccggaagctccaagtaccgcgcgctcacccgccccgacgacccagatcgcgccaga
gatctacgcctcgagcttgagcgcgacgccgcggcggcagcccctgcccccgcccccgct
agggaccgcccccgcgacgatgaccgatctcgggaccgcgaccatgaccgcaggcgcgac
gaccgcgcgcaccatgaccgcagtcgtgacagagaccatggccgcgggcgtggtgaccgc
gaccgtgcgcatgatgaccgtggccatgatcgaggccgtgaccgagacagtgaccgtggc
cgtgacagggatcgagaccgcggtcgccgcgacagagaccgggagggagatcgagacggt
aactggcggagggaccaggaccgcccccaggaaaggggcagagacatggacagggatgca
gacaaggaggcccaaggaaggagtaggaggtatggtgacgacaagggagagcaggagagg
ggtggaggaaggaacacgacgaatgctcttacaaattcgagcggtgacccggagctttac
caggtgtaccgggggagggtgacccgtgtgatggacactggttgctttgtcaggcttgag
gatgtacgtggtggccgtgagggccttgttcatgtatcgcagatggcaagcaggcgggtt
gccaatgcaaaggaggtggtgaagcgtgatcaggaggtgttcgtgaaggtcgtttcagtg
aagggggataaattaagtctctcgctgagagatgtcgatcaggatacgggaaaggacctc
ctaccaatgcagcgtggtgcggaggatgcgccgaggaccaacccgtctgttggtactggt
ggtgctctcgggtctggcaggaggttgggcctatcagggattgtgattacggaggaggat
gaggttgcacccatctcacggcgccccctcaaacggatgagctcaccagagaggtgggag
gccaagcagctaattgcttcgggtgttctggatgtcagggattacccacagttcgatgag
gatggtgatggtatgctgtatcaggaggagggggcagaggaggagctggagattgagctt
aacgaggacgaaccagagttcttgcagggacagagcagattctcaattgacatgtcaccc
gttaagattttcaagaatccagagggttcattaagtcgagcagcagctctccagactgcc
ctcatcaaggagcggcgtgaggttcgagagcaggagcagagagcaatgctggactccata
cccaaggatctgaacaggccatgggaggacccaatgcctgatacaggtgagcgacacctt
gcacaggagctgagaggtgttgggctatcagcttatgacatgccagaatggaagaaggaa
gcctatggaaaagctttaacttttgggcagaggtcaaagctttcgatccaagagcagagg
cagactcttccaatatacaagctgaagaaagagctgattcaagctgtccatgataatcaa
gttttggttgttattggagaaactggctccggaaagacaactcaggtgacacaatatttg
gccgaagcaggttataccacaagaggtaaaattggttgtactcaacctcgtagggtggct
gccatgtctgttgccaagagagtggcagaagaattcggttgtcgactcggagaggaagtt
ggttatgccattcgttttgaagattgcactgggccagaaactgtgataaaatacatgact
gatggaatgcttctgcgtgaaattttagttgatgagaacctttcccagtattcagtagtc
atgcttgatgaagctcatgaaaggaccatccacacagatgtcctctttggtttgctgaag
cagcttattaagcgtagatctgacatgaggcttatcgttacttctgctacccttgatgct
gaaaagttttccgggtatttctttaactgcaacatcttcacaatcccgggaagaacattc
ccagtggagatactctacaccaaacaaccagaaagtgactacttggatgctgcattaatt
accgtgctccagattcacttgacagagcctgagggtgatatccttgttttcttgaccgga
caagaggagattgatcatgcctgtcaatgtctatatgagaggatgaaggggctgggaaag
gatgttcctgagcttataattttgcctgtgtatagtgctcttcctagtgaaatgcagtca
aagatctttgagccagctccaccagggaagaggaaggttgttgttgccaccaatattgct
gaagcttctttgaccattgatggcatattttatgtcatcgaccctggtttcgccaagatc
aatgtttataattcaaaacaaggcctcgattcgttggtcatcactccaatctcacaagca
tcagcgaagcaaagagcagggcgtgctggccgtactggacctggcaaatgttatcgtcta
tacactgaaagtgcttaccgcaatgaaatgtctcccacgacgattccagaaattcagagg
atcaatttgggatctacagttcttaatatgaaggcaatggggataaatgacttgttatcc
ttcgactttatggaccccccagcaccccaagcactcatctcagctatggaacagctttac
agccttggcgctcttgatgaggaggggcttcttaccaaattgggtagaaaaatggctgaa
ttcccactggatccaccactttcaaagatgctactagctagcgtcgaccttggctgcagt
gatgagatactgactatcatagctatgattcaaacagggaatattttctataggcctaga
gaaaagcaagctcaagctgatcagaaaagggccaaatttttccagcccgagggggatcat
cttactcttcttgctgtatacgaggcttggaaggcaaagaacttttcagggccctggtgc
tttgagaattttgttcagtcaagatcactaaggagggcgcaagatgtgaggaaacagctt
ctcactattatggatagatataaattggatattgttgctgctgggaagaactttacgaaa
ataaggaaagcgatcacagcgggcttctttttccatgcggccaggaaggatccccaggaa
ggctacagaaccttggtggaaaaccagccagtgtacatccaccccagcagcgcactgttc
cagaggcagccggactgggtcatttaccacgagctcgtgatgacaacgaaggagtacatg
agggaggtgacggtggtcgacccgaaatggttagtggagttggcgccgaggttctacaag
ggtgcagacccaaccaagatgagcaagaggaagcggcaggagaggatcgagcctctgtac
gacaggtaccacgagcccaactcatggcgtctcagcaagcgccgagcttga
DBGET
integrated database retrieval system
