KEGG   Lolium rigidum (rigid ryegrass): 124703455
Entry
124703455         CDS       T09103                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    124703455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lrd03019]
    124703455
   03036 Chromosome and associated proteins [BR:lrd03036]
    124703455
Messenger RNA biogenesis [BR:lrd03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     124703455
Chromosome and associated proteins [BR:lrd03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     124703455
    COMPASS/SET1 complex (yeast)
     124703455
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40 EIF3I Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd ANAPC4_WD40 NBCH_WD40 Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_EIPR1 PQQ_3 Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_EML WDR90_beta-prop_4th Beta-prop_VPS8 WD40_RFWD3 Beta-prop_NUP159_NUP214 Beta-prop_WDR75_1st PQQ_2 Beta-prop_SCAP WD_LRWD1 Beta-prop_WDR35_TULP_N Ephrin
Other DBs
NCBI-GeneID: 124703455
NCBI-ProteinID: XP_047091618
LinkDB
Position
3:276971820..276976098
AA seq 331 aa
MQGGEKEERVTMEVTDEMIKTMEVGLAFRDYNGRISSMDFHSKATNYFVTASDDESIRLY
DIQNAVCLKTINSKKYGVELVCFTTNPSLVLYSSKNGWDESLRLLSLNDNRFVRYFKGHL
DRVVAMSLCYEKDSFLSASLDRTVLLWDLRADKAQGLLRVQGRPAVSYDDQGLVFAVAYG
GFIRMFDARKFEKGPFDIISVGNDDSEANVIKFSSDGRRLLLTTKAGHIHVLDSFHGNHI
ATFKVKPAVTNSTLEASFSPDGNHVISGSGDGSVYAWSVRSGKKVARWGSTDNEPPLVRW
APGSLMFLTGSSELSCWVPDLSKLGSFTVTK
NT seq 996 nt   +upstreamnt  +downstreamnt
atgcaaggtggggagaaggaggagagggtgaccatggaggtcactgacgagatgatcaag
accatggaggtcggtttggccttccgggactataatggcagaattagttctatggatttt
cacagcaaggctacaaactattttgtgacagccagtgatgatgaatcaatacgcctatat
gacattcaaaatgccgtatgtttgaagaccattaatagcaaaaaatatggggttgaattg
gtgtgcttcactacgaacccaagtcttgtcctgtattcctcgaagaatggctgggatgaa
tctctgcggctgctctctctgaatgataaccggtttgtaagatatttcaaaggccatctt
gacagggttgttgctatgtcgttatgctatgagaaagatagttttctttctgcttcactt
gaccgaactgttctcctttgggatctgagggccgacaaagcacagggcttactgcgtgtg
caagggaggcctgcagtttcatatgatgatcagggtttagtttttgcagttgcgtacggt
ggtttcataaggatgtttgatgctcgaaaattcgagaaggggccttttgatattatctct
gttggtaatgatgattctgaagccaatgtcataaagttcagcagtgatggacggcggcta
cttttgaccaccaaagcagggcatattcatgtgctagattcatttcatggaaaccatata
gcaactttcaaagtaaaaccagctgtcaccaattcaacattggaggcatcattcagccct
gatggaaaccatgtcatatctggctccggtgatggtagtgtttatgcttggagtgttaga
agtggaaagaaagtagcacgctggggaagcacagataacgagccaccattggttaggtgg
gctccaggatcattgatgttcttgactggatcttcagaactatcctgctgggtcccagac
ctatccaagctgggatcgtttaccgttacgaagtaa

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