KEGG   Lolium rigidum (rigid ryegrass): 124703459
Entry
124703459         CDS       T09103                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124703459
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lrd03041]
    124703459
   03036 Chromosome and associated proteins [BR:lrd03036]
    124703459
Spliceosome [BR:lrd03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    124703459
 Complex B
    124703459
 Complex C
   U2 SnRNP specific factors
    124703459
Chromosome and associated proteins [BR:lrd03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    124703459
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 HEAT_2 Cnd1 Htt_N-HEAT_1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME IFRD
Other DBs
NCBI-GeneID: 124703459
NCBI-ProteinID: XP_047091621
LinkDB
Position
3:complement(277453120..277458107)
AA seq 1284 aa
MDGIDAELAHAQDERRKLEEALAAGAPMAVSSVTFDKDLYGGGSSGPDRFAGYDTSIPAS
EDDAPDDEPAAAANPAARRLASYTGHALAAADIPRSADDDDGAAAKKSQRIIDREDDYRR
RRLDRIISPARHDPFAAGEATPDPSVRTYGDAMRESKVQQEKEHVLREIAKKKKEEEERA
KDKKPAPDLPPAAATKRRNRWDQSQDADAAAAAAGAKKAKTASDWDAPDATPGIGRWDAT
PGRVGDATPSVRRNRWDETPTPGRMADADATPAAGGITPGATPSGAWDATPKLPGGLVTP
TPKKQRSRWDETPASMGSATPGGTAATPASYTPGPTPFGAENLATPTPGHIARGAVTPEQ
WQLMKWERDIEERNRPLTDEELDAMLPQEGYKILEPPASYQPIRTPARKLLATPTPLTTP
LYNIPEENRGQQYDVPKEMSGGLPDMKPEDYQYFGPLLDEDGEEQLTPEEQKERKIMKLL
FKVKNGTPPQRKTALRQLTDKAREFGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLY
KLDELVRPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNID
EYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKICQQIAILMGCAVLP
HLKSLVEIIEHGLSDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGK
VLAAFLKAIGFIIPLMDALYASYYTKEVMQVLIREFQSPDEEMKKIVLKVVKQCVSTEGV
EADYIRTDILPEFFKHFWVRRMALDRRNYKQLVETTVEMANKVGVTGIVGKIVEDLKDES
EPYRRMVMETIEKVVANLGASDIDPRLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNA
LGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYE
YLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVG
RIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNN
LKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGE
MGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNFVWPNIF
ETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDAL
VASYPALGDDGDNIFSRPELAMFV
NT seq 3855 nt   +upstreamnt  +downstreamnt
atggacgggatcgacgcggagctcgcgcatgcacaggacgagcgccggaagctggaggag
gccctggcggccggcgcgcccatggccgtctcctccgtcaccttcgacaaggacctctac
ggcgggggcagctcgggccccgaccgcttcgccggctacgacacctccatcccggcctcc
gaggacgacgcgcccgacgacgagcccgccgccgccgccaaccccgccgcgcgccgcctg
gcctcctacacgggccacgccctcgccgccgccgacatcccccgctcggccgacgacgac
gacggggccgccgccaagaagtcgcagcgcatcatcgaccgcgaggacgactaccgccgc
cgccgcctcgaccgcatcatctcgcccgcgcgccacgaccccttcgccgccggggaggcc
accccggacccctccgtccggacctacggcgacgccatgcgcgagagcaaggtgcagcag
gagaaggagcacgtgctgcgcgagatcgccaagaagaagaaggaggaggaggagagagcc
aaggacaagaagcctgcgcccgacctgcctccagcggcagccaccaagcggcgcaacagg
tgggatcagtcgcaggatgccgatgctgctgctgctgctgctggagccaagaaggccaag
actgcctccgactgggatgcccctgacgcaactcctgggatcggacgctgggacgccacc
cctggccgtgtcggagatgccacgccctctgtgaggcggaacagatgggacgagacgcca
actccagggaggatggctgatgcagatgcaactccggcagccggtggcattactccagga
gccaccccttccggggcgtgggatgctactcctaagctgcctggtgggcttgtcacacca
acgcccaagaagcagaggtcgcggtgggacgagacgccggcgagcatggggagtgcaaca
cctggtggcaccgcagcgacgcctgcgtcttacactcctgggccgacgccgtttggggca
gaaaaccttgcgacgccaacacctggccatatcgctcgtggcgctgtgactccggagcag
tggcagctgatgaagtgggagcgggacattgaggagcgcaacaggcctctcaccgatgag
gagcttgacgccatgctcccgcaggaggggtacaagattcttgaacctccagcttcatac
cagcccatacgcacaccggcaaggaagctgcttgccacgccaacgcctctgaccacacca
ctttataatattccagaggagaatcgtggacagcagtatgacgtgcccaaggagatgagc
ggtggcttgccagacatgaagccggaagattaccagtactttggaccattgctggatgag
gacggcgaggagcagctaacaccggaggagcagaaggagaggaagatcatgaaacttctc
tttaaggttaagaatggcacgcccccgcagcgaaagacagcacttcggcagctcactgac
aaagcgcgggagtttggtgctggtcctctgttcaacaaaatcctgccattgctcatgcag
ccgacgctcgaggaccaggagcggcatctcctggtgaaggtcattgatagggtgctctat
aaactggatgagctggtccgtccatttgtgcacaagattctggtggttattgaaccactt
ctgattgatgaggattactatgctcgtgttgagggcagggagattatctcaaacctgagc
aaagctgctggtcttgctacaatgattgccgccatgagaccagatattgataacattgac
gagtatgtgaggaatacaactgctagggccttcagtgtggtggcttctgctttgggtatc
cctgccctcctcccatttttgaaggctgtctgtcagagtaagaagtcgtggcaagctcgg
cacactggtatcaagatttgtcagcagattgctattctcatgggctgcgctgttctgcct
caccttaagagcctagttgagatcattgagcatggtctaagtgatgagaaccagaaagta
cggacgatcactgccctctctcttgcggcacttgctgaagctgctgcgccctatggcata
gaaagttttgacagtgtgttgaagcctctctggaagggtatcagatctcaccgtggaaag
gtccttgctgccttcttgaaggctattggtttcatcatccctcttatggatgctctgtat
gccagttactacacgaaggaggtgatgcaagtcctaattagggaattccagtcaccagac
gaagagatgaagaagattgtcctgaaggttgttaaacagtgtgtcagtacagagggtgta
gaggctgattatatccggaccgacatccttccagaattcttcaaacacttctgggttagg
aggatggctctagatcgtaggaactataagcaactcgtggaaacaactgtggagatggca
aacaaggtgggagttactggtattgttggtaagattgtggaggatctgaaagatgagagt
gagccttacaggagaatggtgatggaaacaattgagaaggtggtggctaatttgggtgcc
tcagatatcgatcctcgtctagaggagctgcttattgatggcatcctgtatgctttccaa
gagcagacaagtgatgatgcaaatgtcatgcttaatggttttggagctgttgtgaatgca
ctcggccagagggtcaagccttaccttcctcagatatgtggtaccatcaagtggcggttg
aacaataagagtgcaaaagttaggcagcaagctgctgatttgatctcaaggattgccatt
gtgatgaagcagtgccaggaggagcagcttatgggtcacctgggtgttgtgctgtatgag
tacttgggagaggagtatcctgaggtcctgggttcaattcttggagctttgaaggctatc
gtgaacgttattggtatgaccaagatgacaccgcctatcaaggatcttcttcctcggctg
acccccatcttgaagaataggcacgagaaggtccaagagaactgcatcgatctagttggt
aggattgctgaccgtggagcagaatttgtaccagctagggagtggatgaggatttgtttt
gagctgctggaaatgttgaaggctcacaagaagggcatcagaagagccactgtgaacaca
tttggttatattgcgaaggcgattgggccacaggatgtgttggccactctgttgaataac
ttgaaggtgcaggagagacagaaccgtgtttgcactaccgtggcaattgctattgttgct
gaaacttgctcgcctttcacagttttacctgccctcatgaatgagtaccgggttccagag
ctcaatgtccagaatggtgttttgaaatctctctcattcctctttgagtatattggcgag
atggggaaagattacatatatgctgtcactcccttgcttgaagatgctttaatggacagg
gatctagttcacagacagactgctgcatctgctgttaaacatatggctctaggagttgct
ggcttgggctgtgaggatgctcttgtccatttgcttaactttgtctggcccaatatattt
gagacatctccccatgtcataaatgctgtcatggaggccattgaggggatgagagttgct
ctaggtgcagctgtggttctgaattattgtctccaaggacttttccacccagcaaggaaa
gtacgtgaagtatattggaagatctacaactcactgtatattggtgcacaagatgcactt
gttgcttcttaccctgcactgggcgatgacggggacaatatcttcagccgtccagagcta
gccatgttcgtgtga

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