Lolium rigidum (rigid ryegrass): 124703537
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Entry
124703537 CDS
T09103
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124703537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124703537
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124703537
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124703537
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Peptidase_M9_N
DUF5646
Motif
Other DBs
NCBI-GeneID:
124703537
NCBI-ProteinID:
XP_047091708
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Position
3:290184420..290194546
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AA seq
862 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWLNSVVSDLENQIDNFEAELEGLSFKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVEDLYSTLPMEKVEA
LEDMVSLAPSILIKGVSAVSTTAVSSTKSPTATSPTQATVPTTSQGTSQDQAEETASLES
NPDSVPQTPPPKGVNLGPSVPVVPTAITTTVAAVSVLADTISSPGPVRPSIPTTVPAIFS
SATVRIAPESMPTVPSAPANSSSALKDDDGMNFPPRRPSPAITEIGLGRGITRGLTGQAL
GAPPISAGPVPGNGSISALPAINDLSKRNILNTDERVNSGGLSQQLASPLANKVQLQPVL
RTNDAIISDSNNTSESTILGGRVFSPPVVSGVQWRPQAPAGFTNQSESAQFRGRPDVVDH
REKYFPRLQQSQPQGNAVNASNASGTNQKQFSTQQPNSLLQQFNSQNSSISSQVGIGMGV
QGPDAGHTKSEEQPGLAEDGSVEAAAATGANKNTNEDDTKTPYSNPSASIAEGTQLSRDS
DLSPGQPLQPGMPSSGVGVIGRRSVSDFGAVGDNLSGTSATAGHDHLYNLQMLEAAYHRL
PQPKDSERARNYTPKHPSPTPASFPQVQAPIVTNPAFWERLGTDTLSTDMLFFAFYYQQN
SYQQYLAAKELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYVYFDFHLADDGNGWVQ
RIKNDFTFEYNYLEDELSVQPN
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagtcggaagctgcagggcgagatcgaccgcgtcctcaagaaggtccaggag
ggcgtcgacgtcttcgacagcatctggaacaaggtctacgacaccgagaatgccaaccag
aaggagaagttcgaggccgacctcaagaaggagatcaagaagctgcagcgctaccgggac
cagatcaagacctggatccagtccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctcttatggatgcccgcaagcagattgaacgcgaaatggaacggtttaaggtc
tgtgagaaagaaactaaaaccaaggccttctcgaaggaaggattaggtcaacaaccgaaa
actgatcctagagagaaggctaaatctgaaactagagattggcttaacagtgtggttagt
gatttggaaaatcagattgataattttgaagcagagcttgaaggactttcatttaagaaa
ggaaagcaaagacctcctcgattggtacatctagagaaatctattacgcggcataaggct
catataaagaaattggagtcaatcttgagactcttggataatgatgagttgagtcctgaa
caagtcaatgatgtgaaagatttcctggaagattatgttgagcgtaaccaggaagatttt
gatgaatttagtgatgttgaggatctttatagcacattacctatggagaaggttgaagca
cttgaagacatggtttcacttgctccttccattcttattaagggtgtttctgctgtttct
acgactgcagtttcgagtacaaagagtccgacagcaacttcacctactcaggctactgtc
ccaacaacctcacaaggtacatcacaagatcaagctgaggaaacagcttcactagaaagt
aatcctgattcagtgccacaaacaccacctccaaaaggtgtaaatctgggaccttcagtg
ccggttgtgccgactgccattactaccactgttgcagctgtttcagttttggcagatacc
attagttcaccaggcccagtacgaccatctattcctactacagtacccgcaatattttct
tctgctactgttcgaattgctccagagagcatgcccactgttccttctgctcctgcaaac
tcatctagtgccttgaaggatgatgatggcatgaactttcctccacgcagaccgtctcct
gcaattactgaaattggtcttggcaggggtattactcgtgggttaactggtcaagcacta
ggcgctcctcccataagtgcaggtccagttccaggaaatggatcgatcagtgcacttcct
gcaataaatgacttgtccaaaagaaacatattgaatactgatgagagagttaacagcggt
ggtctttctcagcagttagcttcacctcttgctaacaaggttcaactgcaaccagtcctg
aggaccaatgatgcaattatctctgattctaataacacaagtgaaagtaccattcttgga
ggaagagtcttttccccaccagttgtttctggtgttcagtggaggcctcaagctcctgct
ggttttacaaatcaaagtgaatctgctcaatttcgtggaagacctgacgttgttgaccat
agggagaaatattttccaagattgcagcaatcacagccgcaaggcaacgccgttaatgct
tctaatgcatcaggcacaaatcagaagcagttttccacccagcagccaaattccctctta
caacagtttaattctcagaattcctcaatatcctctcaagtgggcattgggatgggggtt
cagggcccagatgctgggcatacaaaaagtgaagaacaaccaggtttggctgaagatggt
agcgtagaggctgctgcagcaactggagcaaataaaaataccaatgaagatgacacgaag
actccatattcgaatccctcagcatctatagcagaaggtacccagttatctagagactct
gatctatcacctgggcagcctttgcaacctggcatgccatcatctggtgtcggtgttatt
ggccggaggagtgtatctgatttcggtgcggtcggagacaatcttagtgggacttctgca
actgctggtcatgatcacctttataatttgcaaatgctcgaagctgcataccacaggctt
ccacaacctaaggactcagagcgtgcaagaaattatactccgaagcatccttcaccgacc
ccagctagtttcccacaagttcaggcaccaattgtgacaaaccctgcattttgggaaaga
cttggtactgatacattatctacagacatgttattctttgcattctactaccaacagaat
tcataccaacaatatctggctgcgaaagaactaaaaaaacagtcatggagatttcatagg
aagtacaatacttggttccaacggcatgtggagccacaagttacaacagatgagtatgag
cggggatcttatgtgtactttgatttccatctggcggatgatggcaacggatgggtccaa
agaatcaagaatgacttcacgtttgaatacaactaccttgaggatgaactgtcagtacaa
ccaaattag
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