Lolium rigidum (rigid ryegrass): 124703676
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Entry
124703676 CDS
T09103
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124703676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124703676
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124703676
Spliceosome [BR:
lrd03041
]
Complex C
Other components
Step II factors
124703676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
AAA_22
HA2_C
DEAD
AAA_19
AAA_30
ABC_tran
ATPase_2
AAA_16
SLFN-g3_helicase
Helicase_RecD
NPHP3_N
T2SSE
Dynamin_N
nSTAND3
SRP54
AAA_33
FtsK_SpoIIIE
AAA_29
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
124703676
NCBI-ProteinID:
XP_047091854
LinkDB
All DBs
Position
3:305850097..305861739
Genome browser
AA seq
706 aa
AA seq
DB search
MPSPSRPPTPPVLPISEHEDEIVAAVEANPVIVVIGETGSGKSTQLSQILHRRGYTRRGA
IAVTQPRRVAAVSVSRRVAQELGVPLGEEVGYAIRFEDRTSEKTSIKYLTDGVLLRESLS
NPELRQYSVIILDEAHERSLNTDILLGLMKRLIKHRASDLKVLITSATLDGLKVSNFFSG
CPVLNIPGTIFPVEKFYSTDRPTNYVESSLRTAIDIHVKEAPGDVLIFMTGKDDIDKMVS
KLEERIQNLEEGSCIDALVLPLHGSLPPEQQVRVFAPAPPDCRRFIVATNVAETSLTVDG
VVFVIDCGYVKQRQYNPSTGMYSLDVVQISRVQADQRAGRAGRTRPGKCYRLYPSAIYQN
EFLEATIPEIQRTSLAGSVLYLKSLNLPDIDILKFDFLDPPSRESLEDALRQLYLIDAID
ESGQITDVGRLMSELPLDPSLSRTLIEANELGCLSQALTVAAVLSAEITLRQTRSKDMEG
KRKRQELPDGSGLGDHVQLLQIFESWDQAGYDPRWCSDHDLQVRGMKFSKDVRNQLSQII
QKVAKGPTDLQARRGHKSDPDYRKLRRALCVGYGNQLAERMIHHNGYHTVGYRTQLVQVH
PSSVLAEDEYGKLPVYVVYHELINTTRPFMRNVCGVEQDWVKPILKKLEKLNINKLSGGS
SALMDSELLNDKQPGSPTKATGPKQSDVDSKIQAARERYLARKGKK
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgccgtcgcggccgccgacgccgccggtgctgccgatatcggagcacgaggac
gagatagtggcggcagtggaggcgaacccggtgatcgtcgttatcggcgagaccggctcc
ggtaagagcacccagctctcacagatcctccaccgtcgaggctacacccgccgcggcgca
atcgcggtcacccagccgcgccgtgtcgcggccgtatccgtctcaaggagggtggcacaa
gagctcggtgtcccacttggggaagaagttggctatgcaattagatttgaagaccgaact
tcagaaaagacttcgattaagtacctgacagatggtgttcttctgcgggagagcctttca
aatcctgagttgaggcaatactcagtaattatcttggatgaagctcatgagcgtagcttg
aacactgatatcctcttaggtttaatgaaaagattgatcaaacatcgagcttcagatttg
aaagttctcatcacttcggcgacacttgatggtttgaaagtgtcgaatttcttctcagga
tgtcctgtgttgaacatccctggaaccatattccctgtggagaagttttacagcacagat
cgtccaacaaattacgtagaatcttctctcagaacagctatagatatccatgttaaggaa
gctccaggggatgtattaatatttatgacaggaaaggatgacattgataagatggtctca
aaattggaagaaagaattcaaaatcttgaggaaggttcttgtatagatgctcttgtcctc
ccactccatggttctttgccacctgaacagcaggtccgagtatttgctccagcacctcca
gattgtcgacgattcattgttgcgacaaatgtagctgaaacttcgttgactgtggatgga
gttgtgttcgtgatagattgtggttatgtaaagcaacgccagtataatccgtcaactgga
atgtattcacttgatgtagttcagattagcagagtgcaggctgaccagcgagctgggcga
gctggaagaactcggcctggcaagtgctataggttatacccaagtgccatctaccaaaat
gagtttcttgaggctacaattccagaaattcaacgaacttcccttgctggaagtgttctg
tatctgaaatcattaaatctccctgatatcgacatcctgaagtttgatttcctcgaccca
ccatcacgtgaatcattggaagatgctttgaggcagttatacctcattgatgcaattgat
gaaagtgggcaaataacagatgttggacgcctcatgtcagagctccctcttgatccttca
ctttcaaggacattgattgaagcaaatgaactgggatgtctgtctcaggcattaactgtt
gctgcagttttgtcagctgaaatcacgctgcggcaaactagaagcaaggacatggaggga
aagagaaaacggcaagagcttcctgatggttctggcttgggtgaccatgtgcaattgctt
caaatatttgaaagctgggatcaagcaggctatgatccaagatggtgctcagaccatgat
ttgcaggtgcggggcatgaaatttagcaaagatgtgaggaatcaattaagtcagattatt
caaaaagttgcaaaaggtccaacagatttgcaagcaaggagaggacacaagagtgaccct
gactacagaaagttgaggagagctctttgtgtaggctatggcaaccagttagctgagagg
atgatccatcataatggttaccatactgttggatacaggacgcaacttgtgcaggtgcat
ccatcttccgtgctggcagaagatgaatatgggaaattacctgtgtatgttgtctaccat
gaacttatcaatactacgcgacctttcatgagaaatgtttgtggggtcgagcaggattgg
gttaaaccaatcttaaagaagcttgagaaattgaacataaataaattaagtggcggttcg
agtgcattgatggattctgaacttctaaatgacaagcaaccaggctcgccgacaaaagct
acgggtcctaagcagtctgatgtggacagcaagatccaggcggccagagagcgctacctc
gcacgaaaaggcaagaagtga
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