Lolium rigidum (rigid ryegrass): 124703775
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Entry
124703775 CDS
T09103
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03020
RNA polymerase
lrd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124703775
09124 Replication and repair
03420 Nucleotide excision repair
124703775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124703775
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124703775
Enzymes [BR:
lrd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124703775
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124703775
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124703775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
124703775
NCBI-ProteinID:
XP_047091950
LinkDB
All DBs
Position
3:complement(318463034..318470781)
Genome browser
AA seq
1225 aa
AA seq
DB search
MEDDEYEEGMEMDMGGHQQLHHRGYGAEEDGEGGYGGGGGDGDDEDAEEARDEDEITQED
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETL
HKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVVKKGHDCEEVT
ETAEYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFVINGSEKVLIAQEK
MSTNHVYVFKKRQPNKFAYVGEVRSMAENQNRPASSMFVRMLSRAGAKGGTSGQYIRATL
PYIRADIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDY
IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMVALGRR
AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTI
TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVI
PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS
RPLFIVESQRLLIKKKHIRALQQRETPDEGWHDLVAKGFIEYIDTEEEETTMISMTITEL
LGARNNPEEAYLATYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT
NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ
SSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGT
RVSGEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVK
VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQ
LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMI
FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAXGRSRDGGLRFGEMERDCMIAHGAAF
FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE
LMSMAIAPRMLTHEIKPGQEKKRWA
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacgagtacgaggaggggatggagatggacatgggcgggcaccagcagctc
caccaccgcggctacggcgccgaggaggacggcgagggcgggtacggcggcggcggcggg
gacggggacgacgaggacgcggaggaggcgcgcgacgaggacgagatcacccaggaggac
gcctgggccgtcatctccgcctacttcgaggagaagggcctcgtgcgccagcagctcgac
tccttcgacgagttcatccagaacaccatgcaggagatcgtcgacgagtccgcagacatc
gagatccgccccgagtcgcagcacaacccaggccgacaggccgagttcgccgagacactc
cacaagatcagctttggtcaaatctacctgagcaaaccaatgatgaccgaagctgatgga
gaaaccgctaccttattccccaaatcagcaaggctcaggaatctgacatactcagcacca
ctttatgttgatgtatcatacagagttgtaaagaagggacacgactgtgaagaagttaca
gaaacagcagaatatccaaaagttttcattggaaaggttccgatcatgttgcgttccagt
tactgcacactgtatcaacaatctgagaaggatctcacagaacttggagagtgcccttat
gaccaaggaggatattttgtaatcaacggcagtgaaaaggttctcattgcacaggagaag
atgagcaccaaccatgtctatgtttttaagaagaggcaaccaaataagtttgcatatgtg
ggtgaagtccgttcaatggcagagaaccagaatagacctgctagtagcatgttcgttcgg
atgctttcccgtgcaggcgcgaaagggggtacatcaggtcaatatattcgtgctactttg
ccatacattcgtgcagacattcccatcattattgtgtttagagcattaggatttgttgcc
gacaaagatatcctggagcacatatgttacgattttgccgatacacaaatgatggaattg
ctacgcccatctttggaggaagcttttgtcattcaaaatcagcaggttgctctggactac
attggaaagcgtggtgctacagttggtgtaacaagagaaaagagaatcaagtatgccaaa
gagatacttcaaaaggaaatgttgccccatgttggtgtaggcgaattttgtgaaactaaa
aaggcatactactttgggtatattattcaccgcctattgatggttgctcttggtcgaaga
gctgaagatgacagagatcattatggtaacaaaaggctggaccttgcaggtccattgctt
ggaggactgttcagaatgcttttcaggaaactgacgagggatgtgaggtcatatgttcag
aagtgtgtcgataatgggaaggaagttaatttgcaatttgccatcaaagcgaaaaccatt
actagtggattgaagtattcccttgctacgggaaactggggacaggctaatcaagctggt
acaagagccggtgtgtctcaggtgctcaatcgccttacatatgcttctacattatcacat
ctgcggaggctgaactctcctattgggcgtgaagggaaactggcaaaacctcgccaactt
cataattctcattggggaatgatgtgtcctgctgaaacacccgaaggacaagcttgtggc
ttggtaaaaaatcttgccttgatggtctatatcactgttggttctgccgcaaatcctatt
ttggaatttttggaagagtggggcacagaaaattttgaggagatatcaccagcagtcatt
cctcaagctgctaaaattttcgttaatggttgctgggttggaattcataggaatcctgac
ctattggtgaagacacttcggcgtttgagaagacagattgatgtcaacactgaagttggt
gtggttcgtgatattcgtcttaaagaacttcgactctatacggattatgggcgttgcagt
cgtccactgtttattgttgaaagccagaggcttctcattaagaagaagcatattcgagca
ttgcagcaaagagagactcctgacgaaggttggcacgacttggttgccaaaggttttata
gagtacatagatactgaagaggaagagactactatgatctctatgactataactgaactt
ttaggtgcgaggaataatccagaggaggcatatcttgcgacttacacacactgtgagatt
cacccttctttgatccttggtgtgtgcgcgtcgattattcctttccctgatcacaaccag
tcacctcgtaatacttatcagtctgctatgggaaagcaagctatgggaatctatgttact
aactatcagttaagaatggacacgttggcctacgttctgtactacccacaaaagcctctt
gttactactcgtgctatggagcatttgcacttcaggcagttaccggctggcattaatgct
attgttgccattgcatgctactctggatataaccaagaagattcggttattatgaaccaa
tcttcaatagatcgtgggttcttcagatcactatttttccgctcttacagagatgaggaa
aagaagatgggaactcttgtcaaagaggaatttggccgtccaaatagggagaacaccatg
ggaatgcgccatgggtcctatgataaattagatgatgacggacttgcaccaccaggaaca
agggtctctggggaagatgtcattattgggaagacatctcctattccacaagatgatgct
caagggcaagctactagatactcaaagcgtgatcatagtacttctctgcgtcacagtgaa
agtgggatggtggatcaggttcttttaacaacaaatgctgatggtttgagatttgtcaag
gttagaatgcgatcggttcgcataccacaaataggagataagttcagtagtaggcatggt
cagaagggaaccgttggaatgacttacacacaagaggacatgccatggacaatcgaaggc
atcacgcctgatatcattgtgaatccacatgctattccatcccgtatgactatcggccag
ctgattgagtgtattatgggtaaagttgcagctcacatgggaaaggaaggagatgcaact
cctttcactgatgttactgtggataacatcagtaaggcacttcataagtgtggttatcaa
atgcgtggatttgagaccatgtacaatggtcacactgggagaaaattgactgcaatgatc
ttcctaggtccaacttactaccagagacttaagcacatggtggatgacaaaattcactct
agaggccgtggtcctgtccagatattgaccaggcagccagcangagggcgctcccgtgat
ggtggtctccgttttggagaaatggagagggattgtatgattgctcatggcgctgcattt
ttcttgaaggaacggttatttgaccagagcgatgcttacagagtacatgtgtgtgagaag
tgcggactcattgccattgccaatctcaagaagaattccttcgagtgcagaggttgcaag
aacaagacagacattgtccaggtccatataccatacgcatgcaagctcctcttccaggag
ctcatgtcaatggcaattgctcccaggatgctcacccatgagatcaagcctgggcaggag
aagaaacgttgggcttga
DBGET
integrated database retrieval system
