Lolium rigidum (rigid ryegrass): 124704007
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Entry
124704007 CDS
T09103
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124704007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124704007
03036 Chromosome and associated proteins [BR:
lrd03036
]
124704007
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124704007
Coactivators
SAGA/TFTC/STAGA complex
124704007
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
124704007
STAGA complex
124704007
TFTC complex
124704007
SAGA complex
124704007
SLIK complex
124704007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Cytochrom_D1
Beta-prop_IP5PC_F
Beta-prop_VPS8
WD40_like
RecX_HTH3
DUF4518
SpoVT_C
PALB2_WD40
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
124704007
NCBI-ProteinID:
XP_047092195
LinkDB
All DBs
Position
3:347136574..347143810
Genome browser
AA seq
658 aa
AA seq
DB search
MEDEEMEKKVQQYLHRKGFRLTELALQEERNRLSTTSLSDVSLSRSDNDPARYYDGYNKL
RTWAYNSLDQYKHELLRVLYPVFIHCFMDLVAEGHTQEARSFFHRFREDHELMHSRDLQK
LEGILSPLHLEEMDLARSLRENKFRIKLCEYSYELLLQYLQKTQALVMLGIINERIIFEV
SAGQPSLISDDADVVALVGTSKDLAKQINQKEVHWGLLEDSVEERMEKALSDSDKTEAES
KDADAEDNNKKKSSEGGKQGGPLNKKLKKDKVVGAAGKNNKSEASMVSAAPRVKPELTLP
ATPVEVEQSILEDLRNRAQLNNLALPSVSFYTFLNTHNGLNCSSISNDGSLVVGGFSDSS
VKVWDMAKIGQPAKTSSSQGENGSSQGEHLSSTSEGKRPYTLFQGHSGPVYSAAFSPFGD
FLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDK
IQPLRIMAGHLADVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLA
MSPDGRYMASGDEDGTIMMWDLSTGRCVSPLAGHNSCVWSLAFSCEGALLASGSADCTVK
LWDVASSTKALKVDDTKAGSTNRLRLLKALPTKSTPVYNLRFSRRNLLFATGALSLGS
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaggtgcagcagtacctgcaccgcaagggcttccgc
ctcaccgagctcgcgctgcaggaggagcggaaccgcctctccaccacctccctctccgac
gtctcgctttccaggtcggataatgatccagcaagatactatgatggttacaacaagcta
agaacatgggcgtacaattctctggaccagtacaagcatgaattactccgtgtcctttat
ccagtgtttatccattgcttcatggatctagtcgcagagggacatacacaagaagctcgg
tcgtttttccatagatttcgggaagatcatgaactgatgcattcaagggatctccaaaag
ctggaaggcattctttctcctttgcatttggaggaaatggatctggctagatctttaagg
gagaataaattcagaattaaattatgtgagtattcatatgaattacttctccagtatctc
cagaaaacacaagctcttgtgatgcttggaataatcaatgaaaggataatttttgaagta
tctgctgggcaaccttcattgatctctgatgatgcggatgttgttgctctggttgggacc
agtaaggacttggcaaaacagataaatcagaaggaagtgcattgggggttgcttgaagat
tcagtcgaggagcgtatggagaaagcactctcagattctgataaaactgaagcagaaagc
aaggatgcagatgcggaagataataacaagaaaaaatcttcagaaggtggaaagcagggt
ggtcctcttaataaaaagctaaaaaaggataaggttgttggtgcagcagggaaaaacaac
aaatccgaagcaagcatggtatctgcggcacctcgtgtgaaaccagagctaacccttcca
gcaacgcctgttgaagttgagcaatcaattcttgaggacttgcggaatcgtgcacaattg
aataacttggcattgccatccgttagcttctatacattccttaatacacataacggatta
aactgctcatctatctcaaacgatggatcattggttgttggtgggttctcagactcatca
gtaaaggtttgggatatggcaaagattggtcaacctgccaaaacatctagttcacaagga
gagaatggatcttcacagggtgagcacttgtcatcaacatctgaggggaagagaccttat
acattattccagggtcattctgggccagtttattctgctgcctttagtccatttggggat
tttctcctgtcatcatcttcagattcaacaattcgactgtggagtacaaagctgaacgcc
aatcttgtttgttacaaaggacacaattacccagtttgggatgtccaatttagtccagtc
ggtcattactttgccagtgcctcgcatgataggactgctcgaatctggtccatggataaa
atccaacctttgcgaatcatggctggacatcttgccgatgttgattgtgtgcaatggcat
gtcaactgtaactacattgccacgggctccagcgacaaaactgtaaggctatgggatgtt
caaacaggtgaatgtatacggatgtttattggtcataggagtatggtcttgtcattggca
atgtctcctgatgggcgatacatggcctctggagacgaagatggaaccatcatgatgtgg
gatctttctactggtcgctgcgtttcaccactagcgggtcacaactcttgcgtgtggtca
cttgctttcagctgcgaaggagcattgcttgcttctggatcagcggattgcactgttaaa
ctctgggatgtcgcttccagcacaaaggcccttaaggtggatgacaccaaagctggttct
acaaacaggctgaggttgctaaaagctctcccgacaaaatcaactcctgtttataacttg
cggttttctcggaggaatcttctatttgctactggtgctctctcgctaggctcctaa
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