Lolium rigidum (rigid ryegrass): 124704298
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Entry
124704298 CDS
T09103
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124704298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124704298
03012 Translation factors [BR:
lrd03012
]
124704298
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124704298
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124704298
Translation factors [BR:
lrd03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124704298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
ABC_tran
NACHT
ATPase_2
AAA_16
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
124704298
NCBI-ProteinID:
XP_047092503
LinkDB
All DBs
Position
3:373245237..373252078
Genome browser
AA seq
1183 aa
AA seq
DB search
MRRCLRRGLGILLVPLPSPLSRPPPPPVPLAALLLLPRRLDAFSLRPFCSYGGGRAVEQF
SDDEYDHEYEDHRPSSSVANIDEWRWKLNMLQRNAEEQEIISRDRRDRRDYDQIANLAKR
MGLYSELYGRVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLPF
DKDGRETESGSEKAEPGSLDERQDPMLDQSVMEKVLQRKSIRMRNFQRSWQESPEGVKMV
EFRKSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVMESEIESGRGAFCNIIC
TQPRRISAMAVAERVSTERGENLGESVGYKVRLEGMKGRDTHLLFCTSGILLRRLLSDRN
LNGVSHVFVDEIHERGMNEDFLLIVLKDLLSRRPDLRLILMSATLNAELFSSYFGGAPTI
HIPGFTHPVRAHFLEDILERTGYKMTPSNQLDDYGQDKVWKTQRQLLPRKRKNQITTLVE
DALQNSNFETYGSRTRDSLSNWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDISS
LKDQLKAHPLLGDPNRVLLLSCHGSMATSEQRLIFDKAPPNVRKVVLATNMAEASITIND
IVFVMDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVTPGECYHLYPRCVYDA
FAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPRAVQNAVEFLKMIGSLDE
NEDLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPILTVVAGLSARDPFLLPQDKKDLAG
TAKSRFSAKDYSDHMALVRAYEGWKDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQFSYI
LKDAGLIDSDANTNNSLSHNQSLVRGVICSGLFPGISSVVHRENSMAFKTMDDGQVLVYA
VSAYMSVLKCSSTTPCLIHHLADMLNLTLRFIQNSVNAKYQTIPYPWLVFGEKVKVNAVF
IRDSTGVSDSILILFGGAVTKGSVAGHLKMLDGYIDLFMDPSLSECYLQLKEELDKLVHK
KLEDPTFDIHKEGKYILFAAQELAAGDLCEGRFVFGRETRRARLRDSEDGKSNIIKDGMN
PKSLLQTLLMRAGHTPPKYKTKHLKTNEFRSMVEFKGMQFVGKPKRNKQIAERDAAIEAL
GWLTQTSGTKLQDEGDDSPLDLTDNMLKLLSKPRKHTRKNSRK
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgctgcttgcggcgcgggctgggcatcctcctcgtcccactcccaagcccactc
agccggccgccgccgccgccggtccctctcgcggctctcctcctcctcccgcgccgcctc
gatgccttctcccttcgccccttctgcagctacggcgggggccgcgccgtcgagcagttc
tccgacgacgagtacgaccacgagtatgaggaccaccggccgtcgtcgtcggtggccaac
atcgacgagtggaggtggaagctgaacatgctgcagcgcaacgcggaagagcaggagatc
atctccagggaccggagggaccgccgggactatgaccagatcgccaacctcgccaagagg
atggggctctacagtgagctgtatgggagggttattgttgcgagcaaggtcccgctgccg
aactacaggccagacctggacgacaagcgtccgcagagagaggtggtgatcccgctaagc
ttgcagaggagggttgagggacttgtgcaggagcaccttgaccgtgcgctcttgccattt
gataaagatggccgcgagacggaaagtggttccgagaaagctgagcctgggagcttggat
gagaggcaggatcccatgctcgaccagtcggtcatggagaaggtccttcagaggaagagt
attcggatgcgcaattttcaacgaagttggcaggaatcacctgaaggtgttaagatggta
gaatttcggaaatccctcccagcatacaaggagaaggaaaggcttctagcagccattgca
cgtaatcaggttatagttatttcgggagagacggggtgtggcaagacaacacagttgcct
cagtttgtgatggagtcagagatagaatctggtcggggggccttttgtaacataatttgt
acacagccacggagaatatctgcaatggccgttgcagaaagagtatccaccgaaagagga
gaaaatcttggtgaatcggttggctacaaagttcgattggagggaatgaaaggaagggat
acacatttacttttctgtaccagtggtattttattgagacggttgctgagtgaccgaaac
ttgaatggggtgtctcatgtatttgttgatgaaatacatgaaagaggcatgaatgaagat
ttcttattgattgttctaaaggacctattgtcacgacgccccgatttaaggttgatattg
atgagtgctactttaaatgcggaactgttctcaagttatttcggaggagcgccaactatc
cacattcctggattcacacatccagtgagggcgcattttctggaagacatattagagagg
acaggatataagatgacgccaagtaatcaacttgacgactacggccaagataaagtctgg
aagactcagagacagctattgcctagaaagaggaaaaatcaaattactacacttgtggag
gatgctcttcaaaattcgaacttcgaaacctatggctcaaggacacgtgattctttgtca
aactggaatcctgattgcatagggtttaatctcatagaggctgttctgtgccacatatgt
cgcaaagagcgacctggtgcagttttagttttcatgaccgggtgggatgacattagttct
ttgaaggatcaactaaaagcgcatccattgctaggtgacccaaatagagtgctactgctt
tcatgccacggttcaatggctacttctgagcagaggctaatatttgataaggcacctcct
aatgttcggaaggtagtacttgccactaacatggcagaagcaagtattacaataaatgac
attgtttttgtcatggattgtggaaaagcaaaggaaaccacatatgatgctctaaacaac
actccctgcttactcccctcgtggatttcaaaggcttctgcccgccagaggaggggtaga
gctggtcgtgtcacacctggagaatgctatcatctctaccctagatgtgtgtatgatgca
tttgcagagtaccagcttccggagcttcttagaactcctttgaattcactatgtttgcag
ataaaaagtttgcaggttggcagcattggggagtttctatcagctgctttgcagcctcca
gaaccaagagctgtccaaaatgcagtggaattcctgaagatgattggatcattagatgaa
aatgaggaccttactgatctgggaagatacctctccatgcttccagttgatccaaagttg
gggaagatgcttataatgggtgcagttttccgttgcattgaccctatactcactgtggtc
gctggattgagtgcccgggatcctttcctgttgccacaagacaagaaggatttggcagga
actgcaaaatcaagattctcagcgaaagattatagtgatcacatggcccttgtccgagct
tatgaaggatggaaggatgctgagagggaaggatctggttatgagtactgctggagaaat
tttctttctgctcaaacactacaagccattcattctcttcgaaagcaattcagctatatc
ttaaaggatgctggcttgatagattctgacgcaaatacaaataatagtttgagccataat
caatcattagtccgtggtgtcatttgttctgggctttttcctgggatatcatctgttgtg
catagagaaaactcgatggccttcaagacaatggatgatggccaagtccttgtttatgct
gtaagtgcatacatgagcgtcctgaaatgctcatctacaacaccctgtttaatacatcat
cttgcagacatgttgaatctgacattacggtttattcagaattctgtgaacgctaagtac
cagaccatcccttatccatggctggtctttggtgagaaggtgaaggtaaatgctgtcttc
atccgtgattcaactggagtatcagattcgatactgatcttatttggtggtgctgttaca
aaaggaagcgtggctgggcacttgaagatgctcgatggttacattgatctatttatggat
cccagcctatctgagtgctacttgcaacttaaagaagaacttgataaacttgtacacaag
aagcttgaagacccaaccttcgacattcacaaggaaggcaagtacatcttatttgctgca
caagagcttgctgcaggcgacctatgtgaaggaaggtttgtgttcggccgagaaacaaga
cgagcgaggcttcgggacagcgaagatggcaaaagcaacatcataaaggatgggatgaac
ccaaagagcctgctgcagaccttgctgatgagggcaggccacacgcctcccaagtacaag
acaaagcacctcaagaccaacgagttcagatccatggtggagttcaaagggatgcagttt
gttgggaaaccaaagaggaacaagcagatcgcggagagggatgccgcaatcgaagcactg
ggatggctgacacaaacatccggcacgaagctccaagatgagggtgacgactccccgctt
gacctgactgataacatgcttaagctgcttagtaaaccgaggaagcatactcgaaaaaat
tcgaggaaatga
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