Lolium rigidum (rigid ryegrass): 124705336
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Entry
124705336 CDS
T09103
Name
(RefSeq) chaperonin CPN60-1, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124705336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124705336
03110 Chaperones and folding catalysts [BR:
lrd03110
]
124705336
03029 Mitochondrial biogenesis [BR:
lrd03029
]
124705336
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrd04147
]
124705336
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
124705336
Messenger RNA biogenesis [BR:
lrd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
124705336
Chaperones and folding catalysts [BR:
lrd03110
]
Heat shock proteins
HSP60 / Chaperonin
124705336
Mitochondrial biogenesis [BR:
lrd03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
124705336
Exosome [BR:
lrd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124705336
Exosomal proteins of other body fluids (saliva and urine)
124705336
Exosomal proteins of breast cancer cells
124705336
Exosomal proteins of colorectal cancer cells
124705336
Exosomal proteins of bladder cancer cells
124705336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
ChlI
Motif
Other DBs
NCBI-GeneID:
124705336
NCBI-ProteinID:
XP_047093027
LinkDB
All DBs
Position
4:117732799..117738256
Genome browser
AA seq
574 aa
AA seq
DB search
MYRAAASLASKARQAGSSARQVGSRLAWSRNYAAKDIKFGVDARALMLRGVEELADAVKV
TMGPKGRTVIIEQSFGAPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGT
TCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDDVVTNLKGMAKMISTSEEIAQVGT
ISANGEREIGELIAKAMEKVGKEGVITIADGNTLHNELEVVEGMKLDRGYISPYFVTNQK
TQKCELEDPLILIHDKKISNMHAVVKVLEMALQKQRSLLIVAEDLESEALGTLILNKLRA
GIKVCAVKAPGFGDNRKANLHDLAVLTGGEVISEEIGMNLENFDFQMLGTCKKVTVSKDD
TVILDGAGDKKNIEERAEQIRSAIEQTTSDYDKEKLEGRLAKLSGGVAVLKIGGASEAEV
SEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKALDKLQTANFDQKIGVQIIQNALKT
PVYTIASNAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKVGIIDPLKVIRTALVDAA
SVSSLMTTTEAIIVESPKEEKEAPAMGGMGGMEY
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtaccgtgcggccgccagcctcgcctccaaggctcggcaagccgggagcagcgctcgt
caggttggaagcaggcttgcctggagcaggaactacgcagccaaggacatcaagtttggt
gtcgatgctcgtgctttgatgctcaggggtgtcgaggagttggcagatgccgtgaaagtc
acaatgggtcctaagggacgcactgtcatcattgaacagagctttggtgcaccaaaagtc
acaaaggacggtgtcactgttgccaagagcattgaattcaaggacagagtcaagaatgtt
ggtgcaagtctggtaaagcaggttgctaatgcaactaatgatactgctggagatggtaca
acatgtgctactgttttgacaaaagcaatttttaccgagggttgcaagtctgtagcggct
ggaatgaatgcaatggatctaagacgtggaatctcaatggcggttgatgatgttgtgaca
aacctaaagggcatggctaaaatgatcagcacatcagaggaaatagcacaggtgggtaca
atatcagcaaatggggaaagagaaattggtgagctgattgctaaggctatggagaaggtt
gggaaagaaggtgtaatcaccattgcggatggtaatacccttcataatgagcttgaagtt
gtggaaggcatgaagcttgacaggggttacatctctccatactttgttaccaaccaaaag
acccagaaatgtgaattagaagaccccttgatcttgatacacgacaagaagatttcaaac
atgcatgcagtagtgaaagtgttagagatggctctgcagaaacaaaggtctctactgatt
gttgcagaagatctagaaagtgaagcattgggcactctgattcttaacaagcttcgtgca
ggcattaaggtctgtgctgttaaagctcctggttttggagataacaggaaggcaaattta
catgaccttgctgtccttactgggggagaagtcatatctgaagagattgggatgaacctt
gagaactttgattttcagatgttaggtacctgcaaaaaggtgactgtttctaaggatgac
actgttattcttgatggagctggggataagaagaacattgaagagagagcagaacagatt
agatctgcaattgagcaaaccacttctgattatgacaaagaaaaactggaggggcggttg
gcaaagctttctggaggtgttgctgttctaaagatcggaggagccagtgaagctgaagtt
agcgagaagaaagacagagttacagatgcactcaatgccactaaagctgctgttgaagag
ggtattgtgccaggaggtggtgttgcacttctatatgcatcaaaggctctggacaaactg
cagactgcaaactttgatcagaagattggagtacaaatcattcagaatgctttgaagaca
ccagtgtacacgattgcttccaatgcaggcgtagaaggggcagtggttgttggtaagctt
ttggagcaagataacactgatcttggatatgatgcagctaaaggcgaatatgtggacatg
gtgaaggtcggtatcattgaccctctaaaggtgatcagaactgccttggtggatgctgcc
agtgtatcatctttgatgaccaccacagaagccatcatagtagagtctcctaaagaggag
aaagaggcacctgcaatgggcggcatgggtggaatggagtactaa
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