Lolium rigidum (rigid ryegrass): 124705525
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Entry
124705525 CDS
T09103
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124705525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124705525
03012 Translation factors [BR:
lrd03012
]
124705525
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124705525
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124705525
Translation factors [BR:
lrd03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124705525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
BEX
ABC_tran
NACHT
Rad17
Cas3-like_C_2
ATPase
Motif
Other DBs
NCBI-GeneID:
124705525
NCBI-ProteinID:
XP_047093184
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All DBs
Position
4:123936620..123948213
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AA seq
902 aa
AA seq
DB search
MGRIYLQTWLRGTAFTYSNAYNKGKTLVFSKVPLPDYRADLDERHGSAQNEIKMSNETER
RVENLLSRAQSNNNGSASSSTVLTRQSFPSTSSSVAGLTTEIDKQKLSSQLRDLQHSKKM
TPSARSMQSLREKLPAFKMREEFLKAVAANQVLVISGETGCGKTTQLPQFILEEEIDNLR
GADCSIICTQPRRISAISVAARVGSERGEELGETVGYQIRLESKRSTQTRLLFCTTGVLL
RKLVQEPDLLGVTHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLVLMSATINADLFSK
YFGEAPIMHIPGFTYPVAEMFLEDILEKTSYKIKSERENFQGNSRRKRPAPVKNDPVSDV
FEVVDIDKEYGNYSITTRQSLEAWSVTELDLSLVEGTIEYICRHEGEGAILVFLTGWDEI
SKLLDKIKGNNLLGNSNKFLVLPLHGSMPTVNQREIFDRAPANMRKIVLATNIAESSITI
DDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQAGVCYRLYPKVIH
DAMPQFQLPEILRTPLQELCITIKNLQLGAVASFLAKSLQPPDPLSVKNAVELLKTIGAL
DDLEELTYLGQHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAALAHRNPFVLPIDRKQE
ADDVKRSFAGDSCSDHIALLKAFEAWKEAKRSGRERSFCWENFLSPVTLKMMDDMRNQFF
DLLSDIGFVSKTRGVQAYNHYGKDLEMVSAVLCAGLYPNVIQCKRRGKRTAFYTKDVGKV
DIHPSSVNAGVQQFPLPYLVYSEKVKTASIYVRDSTNISDYALLLFGGSLSPSNTGEGIE
MLGGYLHFSAPKRVIELIQRLRGELDKLLQRKIEEPAIDIFSEGKGVVAAAIELLHSQNV
YH
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgggcagaatatacttgcagacatggctcagaggcacggcctttacttatagcaatgca
tacaacaaagggaagacgcttgttttcagcaaagtgccactacctgattaccgagcagat
cttgatgagaggcatggatcagcacaaaatgagattaagatgtccaacgaaacagagaga
cgagtggaaaaccttttgtccagggcacagtcgaataacaatggttctgctagctcatcc
actgtcttaacacgacaatctttccctagcacatcatcgtcagtagctggattaacaacg
gaaattgataaacaaaagctaagttctcagcttagggacctgcaacattcgaaaaagatg
acgccaagtgctagatcaatgcagtccttgagggaaaagttgcctgcattcaaaatgaga
gaggagtttttgaaagcagtggcagccaatcaggttctggtcatttctggcgagacaggc
tgtggtaaaacaacacagcttccacagttcatactagaagaggagatagataaccttcgt
ggtgctgattgcagcataatttgtactcaaccccgccgtatatccgccatatcggttgca
gcacgcgtaggatctgagagaggtgaagagcttggtgagactgttggataccagattcgc
cttgaatcaaagcggtcaacacagacacgactgctcttctgcaccacaggagttttgctt
agaaaactggttcaggagccagacctacttggtgtaactcatttactagttgacgaaatt
catgaacgtggcatgaatgaagattttctcatcatcattttgcgggaccttctgccaagg
cgtcctgaccttcgtcttgtattgatgagtgcaacaataaatgctgatcttttttccaaa
tactttggggaagctcctattatgcatattccgggattcacttaccctgtcgctgagatg
tttttggaggatattttagaaaagaccagctacaagatcaagtctgaacgtgagaatttc
caaggaaattcaagaagaaagagacctgcgccagttaagaatgatccggtgtctgatgtt
tttgaggttgttgacattgataaggagtatggaaactacagcattacaacaaggcagtcc
cttgaagcttggtctgtcactgaactagatttgagccttgtggaaggtacaattgagtat
atatgccgtcatgaaggtgaaggtgcaatccttgtgttccttactggttgggacgaaatt
tcaaaacttctagacaagattaaagggaataatctacttggcaattccaacaaattccta
gtcctcccattgcatggttctatgccaactgtcaatcagcgtgaaatttttgatagagca
ccagctaatatgagaaaaattgttctggcgacaaatattgcagaaagcagtattacgata
gatgatgttgtatatgtaattgattgtggtaaggcgaaggagacaagttatgatgccttg
aataagctagcgtgccttctaccatcgtggatatcaaaagcctctgctcatcagcggcga
ggtcgtgcaggccgtgtacaggcaggtgtctgctataggttatacccgaaagtcattcat
gatgccatgccacagtttcagttgcctgaaatactcaggactcctttgcaagaactgtgc
attactatcaaaaacttacagctgggagcagtggcctctttcttagccaagtcactgcaa
cctccagatccactttctgtaaagaatgcagtcgagcttctgaaaaccattggagcgctg
gatgatttggaggagcttacttatctaggacagcatctttgtacacttccactggatcca
aacattgggaagatgctgctcattggatctgtcttccagtgtctggatcctgcattaaca
attgctgctgctcttgcacatcgtaatccatttgtgctcccaatagacagaaagcaagaa
gctgatgatgtaaaacgatcatttgctggcgactcctgcagtgatcacattgcgcttctt
aaggcatttgaagcatggaaggaagcaaaacgcagtggaagggaacgttctttctgctgg
gaaaatttcctgtctccagtgaccctaaagatgatggatgatatgcggaatcaatttttt
gatctactatctgatattgggttcgttagcaagacaagaggagtgcaggcatataaccat
tatggtaaggatctggagatggtttctgctgttttatgtgctgggctttacccaaatgtc
atacagtgcaaaagacggggcaagaggacagcattctacaccaaagacgttggaaaggtg
gacattcacccatcatcagtcaatgcgggagtgcagcaattcccactgccttatctggtt
tacagcgagaaggtgaaaactgctagcatctatgtgagagactccacaaacatatcagat
tatgctcttctactatttggtggttccctaagtccaagtaacaccggagaaggcatcgag
atgcttggggggtatcttcatttctctgcaccaaagcgtgtcatagagttgattcagaga
ttaagaggtgaactggacaaactcctccagagaaagattgaggaaccggcaattgacatc
ttttcagaagggaaaggggttgtggctgcggccatagaactgttgcacagtcaaaacgtt
taccactag
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