Lolium rigidum (rigid ryegrass): 124705531
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Entry
124705531 CDS
T09103
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124705531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124705531
03012 Translation factors [BR:
lrd03012
]
124705531
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124705531
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124705531
Translation factors [BR:
lrd03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124705531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
BEX
NACHT
ABC_tran
Rad17
Cas3-like_C_2
ATPase
Motif
Other DBs
NCBI-GeneID:
124705531
NCBI-ProteinID:
XP_047093189
LinkDB
All DBs
Position
4:124233089..124246959
Genome browser
AA seq
900 aa
AA seq
DB search
MGRIYLQTWLRGMAFTCSNAYNKGKTLVFSKVPLPDYRADLDERHGSAQNEIKMSNETER
RVENLLSRAQSNNNGSASTSTVLTRQSFPSTSSSVATTEIDKQKLSSQLRDLQNSKKMMP
SARSMQFFREKLPAFKMREEFLKAVAANQVLVISGETGCGKTTQLPQFILEEEIDNLRGA
DCSIICTQPRRISAISVAARVGSERGEELGETVGYQIRLESKRSTQTRLLFCTTGVLLRK
LVQEPDLLGVTHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLVLMSATINADLFSKYF
GEAPIMHIQGFTYPVTEMFLEDILERTSYKIKSERENFQGNSRRKRSAPVKNDPVSDVFE
VVDIDKEYGNYSITTRQSLEAWSVTELDLSLVEGIIEYICRHEGEGAILVFLTGWDEISK
LLDKIKGNNLLGNSNKFLVLPLHGSMPTVNQREIFDRAPANMRKIVLATNIAESSITIDD
VVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQAGVCYRLYPKVIHDA
MPQFQLPEILRTPLQELCLTIKNLQLGAVASFLAKSLQPPDPLSVKNAVELLKTIGALDD
LEELTYLGRHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAALAHRNPFVLPIDRKQEAD
NVKRSFAGDSCSDHIALLKAFEAWKEAKRSGRERSFCWENFLSPVTLKMMDDMRNQFFDL
LSDIGFVNKTRGVQAYNHYGKDLEMVSAVLCAGLYPNVIQCKRRGKRTAFYTKDVGKVDI
HPSSVNAGVQQFPLPYLVYSEKVKTASIYVRDSTNISDYALLLFGGSLSPSNTGEGIEML
GGYLHFSAPKRVIELIQRLRGELDKLLQRKIEEPAIDIFSEGKGVVAAAIELLHSQNVYH
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggcagaatatacttgcagacatggctcagaggcatggcctttacttgtagcaatgca
tacaacaaagggaagacgcttgttttcagcaaagtgccactacctgattaccgagcagat
cttgatgagaggcatggatcagcacaaaatgagattaagatgtccaacgaaacagagaga
cgagtggaaaaccttttgtccagggcacagtcgaataacaatggttctgctagcacatcc
actgtcttaacacgacaatctttccctagcacatcatcgtcagtagctacaacggaaatt
gataaacaaaaactaagttctcagcttagggacctgcagaattcgaaaaagatgatgcca
agtgctagatcaatgcagttcttcagggaaaagttacctgcattcaaaatgagagaggag
tttttgaaagcagtggcagccaatcaggttctggtcatttctggcgagacaggctgtggt
aaaacaacacagcttccacagttcatactagaagaggagatagataaccttcgtggtgct
gattgcagcataatttgtactcaaccccgccgtatatccgccatatcggttgcagcacgc
gtaggatctgagagaggtgaagagcttggtgagactgttggataccagattcgcctcgaa
tcaaagcggtcaacacaaacacgactgctcttctgcaccacaggagttttgcttagaaaa
ctggttcaggagccggacctacttggtgtaactcatttactagttgacgaaattcatgaa
cgtggcatgaatgaagattttctcatcatcattttgcgggaccttctgccaaggcgtcct
gaccttcgtcttgtattgatgagtgcaacaataaatgctgatcttttttccaaatacttt
ggggaagctcctattatgcatattcagggattcacttaccctgtcactgagatgtttttg
gaggatattttagaaaggaccagctacaagatcaagtctgaacgtgagaatttccaagga
aattcaagaagaaagagatctgcgccagttaagaatgatccggtgtctgatgtttttgag
gttgttgacattgataaggagtatggaaactacagcattacaacaaggcagtcccttgaa
gcttggtctgtcactgaactagatttgagccttgtggaaggtataattgagtatatatgt
cgtcatgaaggtgaaggtgcaatccttgtgttccttactggttgggacgaaatttcaaaa
cttctagacaagattaaagggaataatctacttggcaattccaacaaattcctagttctc
ccattgcatggttctatgccaactgtcaatcagcgtgaaatttttgatagagcaccagct
aatatgagaaaaattgttctggcgacaaatattgcagaaagcagtattacgatagatgat
gttgtatatgtaattgattgtggtaaggcaaaggagacaagttatgatgccttgaataag
ctagcgtgccttctaccatcgtggatatcaaaagcctctgctcatcagcggcgaggtcgt
gcaggccgtgtacaggcaggtgtctgctataggttatacccgaaagtcattcatgatgcc
atgccacagtttcagttgcctgaaatactcaggactcctttgcaagaactgtgccttact
atcaaaaacttacagctgggagcagtggcctctttcttagccaagtcactgcaacctcca
gatccactttctgtaaagaatgcagtcgagcttctgaaaaccattggagcgctggatgat
ttggaggagcttacttatctaggacggcatctttgtacacttccactggatccaaacatt
gggaagatgctgctcattggatctgtcttccagtgtctggatcctgcattaacaattgct
gctgctcttgcacatcgtaatccatttgtgctcccaatagacagaaagcaagaggctgat
aatgtaaaacgatcatttgctggcgactcctgcagtgaccacattgcgcttcttaaggcg
tttgaagcatggaaggaagcaaaacgcagtggaagggaacgttctttctgctgggaaaat
ttcctgtctccagtgaccctaaagatgatggatgatatgcgaaatcaattttttgatcta
ctatctgatattgggttcgttaacaagacaagaggagtgcaggcctataaccattatggt
aaggatctggagatggtttctgctgttttatgtgctgggctttacccaaatgtcatacag
tgcaaaagacgtggcaagaggacagcattctacaccaaagatgttggaaaggtggacatt
cacccatcatcagtcaatgcaggagtgcagcaattcccactgccttatctggtttacagc
gagaaggtgaaaactgctagcatctatgtaagagactccacaaacatatcagattatgct
cttctactatttggtggttccctaagtccaagtaacaccggagaaggcatcgagatgctt
ggaggatatcttcatttctctgcaccaaagcgtgtcatagagttgattcagagattaaga
ggtgaactggacaaactcctccaaagaaagattgaggaaccggcaattgacatcttttca
gaagggaaaggggttgtggctgcggccatagaactgttgcacagtcaaaacgtttaccac
tag
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